Ooceraea biroi (clonal raider ant): 105282563
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Entry
105282563 CDS
T05778
Name
(RefSeq) general transcription factor IIH subunit 1
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
obo
Ooceraea biroi (clonal raider ant)
Pathway
obo03022
Basal transcription factors
obo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
obo00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
105282563
09124 Replication and repair
03420 Nucleotide excision repair
105282563
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
obo03021
]
105282563
03400 DNA repair and recombination proteins [BR:
obo03400
]
105282563
Transcription machinery [BR:
obo03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
105282563
DNA repair and recombination proteins [BR:
obo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
105282563
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH_TFIIH
BSD
PH_SLA1
Voldacs
Motif
Other DBs
NCBI-GeneID:
105282563
NCBI-ProteinID:
XP_011342911
LinkDB
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Position
4:7118654..7123006
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AA seq
559 aa
AA seq
DB search
MTTSSEDVLMQVSQVRYKKGDGTLYVMNERIAWMLDNRDTVSVSHKYADIKLQKISPEGK
SKIQLQVVLHDGTSSTFHFVNKNGQEAQIKDRDDVKELLQQLLPKFKRKVNKELEEKNRT
LQEHPVLLQLYRDLVITQVISSEEFWSQHAAEYTQAKKTQRQEIGVNSAFLADIKPQTDG
CNGLKYNLTVDVIECIFKTYPAVKRKHQENVPHKMSESDFWTKFFQSHYFHRDRINAGTK
DLFTECAKIDDQELKKDLQSGINDPLVDITSFEDQTLDENYGSGSSKSDKTSGNIVHQSM
IKRFNQHSIMVMKASTARQSIQTNQPQLNGSTPSASKVTNDESDDGPKIKKRRIQEKLIY
DDLDASCDTNINNGTSLNLTHVDRYLHGPVPGYGSAESTSDELLVTLSHLKREASGWISG
NTLPRQAATSLVSPAAAVSALGELTPGGSLMKGFREESLGQLIPKDLEKEFRNVYVCACE
LLRHFWRSFPPTTPQLEEKAVRMHDALHRFHSAKLKPFEDRVQREFSAVSQHLTSHLNQL
LNTAYRKFAVWQQRKMQMR
NT seq
1680 nt
NT seq
+upstream
nt +downstream
nt
atgactacatcatcggaagatgttttaatgcaagtgagccaagtacgttacaaaaaggga
gacggtactttgtacgtaatgaacgaacggatagcatggatgctcgataacagggatacc
gtatccgtcagtcataagtatgctgacattaaattacaaaagatatctccagaggggaag
tcaaagatacaattacaagtagtactacacgacggtacatcatccacgtttcactttgta
aataaaaatgggcaggaggcacagatcaaagatcgcgacgacgtgaaggagctgctgcag
caactgctaccaaaatttaagagaaaagtcaataaagagctggaggaaaaaaataggacg
cttcaggaacatcctgtgctgcttcagttgtatcgcgacttggtgatcacgcaagtcata
tcgtcggaggaattttggtcgcagcacgccgcggagtatacgcaagccaaaaagactcaa
cgccaagaaataggtgttaatagtgcttttctagctgatattaaaccacaaaccgacggc
tgcaacggattaaaatacaacttaaccgtcgacgtgatagagtgtatatttaagacttac
ccagctgttaagaggaaacatcaggagaacgtacctcacaagatgtcggagtccgacttc
tggacgaagttctttcagtcgcattattttcacagagatcgtatcaacgctgggaccaag
gatctttttaccgaatgtgccaaaatagacgatcaagaactcaagaaagatcttcagtct
gggataaacgatcctttggtagacatcacttccttcgaggatcagacgctggacgagaat
tacggcagcgggagtagtaaatctgataaaacgtcgggcaatatcgttcatcaaagtatg
atcaagagattcaatcaacatagcataatggtcatgaaagctagcactgccagacagtcg
atacaaaccaatcagccacaattgaatggatctacaccgtctgcgagtaaagttacgaat
gatgaatcggacgatggaccaaagattaaaaagcgtagaatacaagaaaagctaatttat
gatgatctcgatgcaagctgtgacacaaatataaataacggaacatcattgaacctgacg
catgtagatagatatttgcatgggcctgtaccgggctacggaagtgcggaatcgacttcc
gacgagctgctcgttacgttaagtcatttaaaaagggaagcttccggatggatatctggc
aacacgttaccgcggcaagcagcaacgtccttagtcagtccggctgcggcagtgtcggct
ctgggtgaattaacacccggtggatccttgatgaaaggtttccgggaagagagtcttgga
caattaataccaaaggatttggagaaggagtttcgtaacgtatacgtgtgcgcgtgcgag
ctgttgaggcacttttggcgaagttttcctccgaccacgccgcagcttgaagagaaagca
gtcaggatgcatgatgctttacatagatttcattctgctaagctgaaaccttttgaggat
cgtgtgcaaagagaattttccgcggtcagtcaacatttaacgagccacctcaatcaattg
ctgaacaccgcatacaggaagttcgcggtatggcaacagcgaaagatgcaaatgaggtag
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