Ooceraea biroi (clonal raider ant): 105282834
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Entry
105282834 CDS
T05778
Name
(RefSeq) protein CASC3 isoform X1
KO
K14323
protein CASC3
Organism
obo
Ooceraea biroi (clonal raider ant)
Pathway
obo03013
Nucleocytoplasmic transport
obo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
obo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
105282834
03015 mRNA surveillance pathway
105282834
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
obo03019
]
105282834
Messenger RNA biogenesis [BR:
obo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
105282834
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Btz
Motif
Other DBs
NCBI-GeneID:
105282834
NCBI-ProteinID:
XP_011343392
LinkDB
All DBs
Position
7:16506578..16512560
Genome browser
AA seq
799 aa
AA seq
DB search
MSDTRRRRKSNQSCGSDDLSDSYEELNATKETQSSEQTDGHQDSECDIYESESDGESQEG
GELRESGDGQEEEKPQKKLDDDEDRRNPQYIPKRGTFYEHDDRTTDEVTDNNTETQTNTK
ETKEKKVWKDKEDRWDHDRYNDEEQAPKRPEELIATYGYDIRNEEGPPRARRRRRYGRGP
NKYTRNWEDEDAYGKTTPGRGNIRRFQKNNEDFPALSNNKNASSKVEEPVISSAWYSSKN
KTQKTQNFPPLQPQQDNAKTKSATVPNTPTNESKVPDDSTNTSWKKDDKHIIQNQNTNGN
SGSGDAEKSVNAKPSPRENNKRNAQESVSLAANRSRGRGFKPNANNNMVANRIVENKAKG
RGPGPVTIENRRNNTVQHSDEHQLVHDMKQVSVSDGNQYHQPARHNKGFFPSSNQHRSNA
VPPRMQSHQQQTHSQQQTIQQQQQQQQQQQDNSGNRPKRYSSLRQRPTISETSAQQNYPS
QHAQHGYFPPQAGNSRSVLESQGYPQGHFEQSSPVASATAGPMAGQPVISLPPGGQPASY
APPAFLVPPPQFIPPQTAPPNIINYVPGPNGPTFPPNFQGYQGYSPSVQPQGPPPPQELF
QPQGCTYYSPAQQQQQQQQQAAPIRRPKAAIPILPPPDNQQGGRGRGRSAQPYQHSNQPG
GGAIVQQTEQQEIKNAAESDEKSVSGQFDSAQIEPSSVPDQEYEHAMDHATDVIASMDDT
NESAEGNAETHAKVDALLSAEDNVDDSNSVTELLETTSAEKNAVSRSPTTTLAVAETECE
LGNIESAISESTIVEKAAA
NT seq
2400 nt
NT seq
+upstream
nt +downstream
nt
atgtcggatacacgacgacgtcgaaaatccaatcaatcgtgcggttccgatgatctctcg
gactcgtacgaggagctcaacgcgacaaaggagacccagagtagtgaacaaaccgatggg
catcaggattcagaatgtgatatttatgagagtgagtcggatggcgaatcacaggaaggt
ggagagttacgagagagcggggacggtcaggaggaagagaagccacagaagaagttggac
gacgacgaggacaggcgtaatccacaatatattccgaaacggggcacgttttacgagcac
gacgatcgtacgaccgacgaagtgactgacaacaacacagaaacgcaaacgaacacaaaa
gaaactaaggagaagaaggtgtggaaggataaggaagacagatgggaccacgatcggtac
aacgatgaggagcaagctccaaagagaccggaagaattgatagctacgtacggttatgat
atcagaaatgaggaagggccgcctcgcgctagaaggagaagaagatacggtcgtgggcct
aacaagtacacaagaaattgggaagatgaagatgcttacgggaagactactcctggtaga
ggaaatatcaggcgctttcagaaaaacaatgaagactttcctgctctcagtaataataag
aatgcttcgagcaaagtagaagagcctgtgatttcatcggcatggtacagcagcaagaac
aaaacgcagaaaacgcagaacttcccgccgcttcagccccagcaggacaatgcgaagact
aaatctgctaccgttcccaatacacctacaaacgaaagcaaggtaccagacgattcaact
aatacatcttggaaaaaggatgacaagcacattattcaaaatcaaaatacgaatggaaat
agcgggtcgggcgacgcggaaaaatcagtcaatgctaaaccatcaccacgggaaaacaac
aagaggaacgcccaagagtccgtaagcctggccgcgaataggagccgaggaagaggtttc
aagcccaatgctaataacaacatggtcgctaacagaatagttgagaacaaagcaaaggga
cgcggccccggcccagtcactatcgagaatagaaggaacaacactgtgcagcacagtgac
gagcaccaacttgttcatgatatgaagcaagtcagcgtcagcgatggcaatcagtatcat
cagcccgcaagacacaacaaaggctttttcccatcttccaaccaacacagatcaaacgca
gttccacctagaatgcagtcacatcagcaacaaacgcattcgcaacagcagacgatacag
cagcagcaacaacagcagcaacagcaacaagataattctggaaacagacctaaacggtat
tccagcctgcgtcaacgacctaccatttcagaaacttccgcacagcaaaattatccatct
caacacgctcagcatggatattttccacctcaagctggaaactcaagaagcgttttggaa
tctcaaggttacccgcagggtcactttgagcaatcttctccagtcgcttctgccacagca
ggacctatggcagggcaacccgttatttccttgccgcctggtggacagcctgctagttac
gcgcctccagcgttcctagttccacctccgcagttcatacctcctcaaactgctcctcct
aatataatcaattacgtgcccggtccgaacggaccaacgttcccaccaaacttccagggt
tatcaaggatacagtccttcagtacagccccaaggaccgccgccgcctcaagaattgttc
cagccgcagggatgcacttactacagcccggcgcaacagcagcagcagcagcagcaacag
gcggctcctatacgacgaccaaaagcggcgatacccattctcccaccgcctgacaatcaa
cagggcggtagaggaagaggtagaagcgctcagccgtaccagcacagcaatcaacctggt
ggtggtgctatcgtgcaacagactgagcagcaggaaattaagaatgcggcggagagtgac
gagaaatccgtgtcaggacaattcgatagtgcgcaaatcgagccgtcgagcgtgccggat
caggagtacgagcacgccatggatcacgctacggacgtgatcgcgagcatggatgatacg
aacgaaagtgcagagggaaacgccgagacgcacgcgaaggttgacgcgttactgtccgcc
gaggacaacgtggacgacagtaacagtgtgacagaactgttagaaacaacgtctgccgag
aagaatgccgtttcacgtagtcccacgacaacactggccgttgctgaaactgaatgcgaa
ttaggtaatattgaatcagctatttccgaaagtaccatcgtcgagaaggccgcagcctaa
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