Ooceraea biroi (clonal raider ant): 105283327
Help
Entry
105283327 CDS
T05778
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2-like
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
obo
Ooceraea biroi (clonal raider ant)
Pathway
obo03020
RNA polymerase
obo03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
obo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
105283327
09124 Replication and repair
03420 Nucleotide excision repair
105283327
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
obo03021
]
105283327
03400 DNA repair and recombination proteins [BR:
obo03400
]
105283327
Enzymes [BR:
obo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
105283327
Transcription machinery [BR:
obo03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
105283327
DNA repair and recombination proteins [BR:
obo03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
105283327
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_1
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
105283327
NCBI-ProteinID:
XP_026825443
LinkDB
All DBs
Position
1:17972482..17978874
Genome browser
AA seq
1047 aa
AA seq
DB search
MSVNEREESQVWPEYTTVVFTVSMGVATDYSNCLKSATKVLRKSSNAVDAVDPGGYFIIN
GSEKVLIAQEKMATNTVYVFSMKDGKYAYKAEIRSCLEHSSRPTSTLWINMMAKSGASIK
KSAIGQRIIAIIPYIKQEIPIMVVFRALGFVADRDILEHIIYDFDDPEMMEMVKPSLDEA
FVIQEQSVALNFIGSRGAKPGVTKEKRIKYAREILQKEMLPHVGISDFCETKKAYFLGYM
VHRLLSASLGRRELDDRDHYGNKRLDLAGPLLAFLFRGLFKNLMKEVRLYAQKFIDRGKD
FNLELAIKTKIITDGLRYSLATGNWGDQKKAHQARAGVSQVLNRLTFASTLSHLRRVNSP
IGRDGKLAKPRQLHNTLWGMLCPAETPEGAAVGLVKNLALMAYISVGSQPSPILEFLEEW
SMENLEEIAPSAIADATKIFVNGCWVGIHRDPDQLMATLRKLRRQMDIIVSEVSMIRDIR
DREIRIYTDAGRISRPLLIVEGQNLLLKKRHIDMLKERDYNNDGWQELVGSGVVEYIDTL
EEETVMIAMSPDDLRQEKEYAYCTTYTHCEIHPAMILGVCASIIPFPDHNQSPRNTYQSA
MGKQAMGVYITNFHVRMDTLAHVLYYPHKPLVTTRSMEYLRFRELPAGINSIVAILCYTG
YNQEDSVILNASAVERGFFRSVFYRSYKEAESKKIGDQEEQFEKPSRSTCQGMRNAIYDK
LDDDGIIAPGIRVSGDDVIIGKTITLPETDDELDSTTKRFTKRDASTFLRNSETGIVDQV
MLTLNSEGYKFCKIRVRSVRIPQIGDKFASRHGQKGTCGIQYRQEDMPFTCEGLTPDIII
NPHAIPSRMTIGHLIECIQGKVSANKGEIGDATPFNDAVNVQKISTLLQEYGYQLRGNEV
MYNGHTGRKINAQVFLGPTYYQRLKHMVDDKIHSRARGPVQILVRQPMEGRARDGGLRFG
EMERDCQISHGAAQFLRERLFEVSDPYRIHICNFCGLIAIANLRNNTFECKGCKNKTQIS
QIRLPYAAKLLFQELMAMNIAPRLMIN
NT seq
3144 nt
NT seq
+upstream
nt +downstream
nt
atgtccgttaacgaaagagaagaatcacaagtatggccagaatataccacagtagtcttc
acggtatccatgggggttgctacggattattcaaattgtctcaaatcggcaactaaagta
ttgagaaagtcgagcaatgcagtggacgctgtggatcccgggggatactttattatcaac
gggtcggagaaggttctcatagcgcaggagaagatggcgaccaacaccgtttacgttttt
agcatgaaggacggcaagtatgcctacaaggctgaaatcagatcttgtttggagcacagt
tcgcgccccacctcgaccctgtggatcaacatgatggccaagagcggagccagcataaaa
aaatccgccataggccaacgcatcatcgcgattattccctacatcaagcaggagattccc
ataatggtcgttttccgcgccctcgggttcgtcgctgaccgcgacatcctcgagcacatc
atctacgacttcgacgatcccgaaatgatggagatggtgaagccgtccctggacgaggcg
ttcgttatacaggagcagagcgtcgccttgaacttcatcggctcgaggggcgcgaaacca
ggcgtgaccaaggagaagcgaatcaagtacgctcgagaaatcttgcagaaggaaatgctg
ccgcacgttggcataagcgacttctgcgagacgaagaaggcttactttctgggctacatg
gtgcacagattactgtcggcgtctttgggacgacgggagctagacgatcgcgatcattac
ggcaacaaaagattagacctggccggacctctactggcattcctgttccgtggcctgttc
aagaacctgatgaaggaagtgcgtctgtacgcgcagaagtttatcgaccgaggcaaggat
ttcaatctcgaactggcgatcaagacgaagatcattaccgatggtttgcggtactcgctc
gccacgggcaactggggcgaccagaagaaggcgcatcaggcgagagcgggcgtgtcgcag
gtgttgaacaggcttaccttcgcgtcgacgttgtcgcacttgaggcgagtaaactcgccg
atcggaagggacggcaaactcgcgaagccgcgtcagttacacaacacgttgtggggtatg
ctgtgcccggcagaaacgcccgagggtgctgctgtgggattggtaaaaaatctggccttg
atggcgtacataagcgttggctcgcagccgtcccctattctggagttcttggaggaatgg
tcgatggagaatcttgaggaaatagctccgagcgctattgctgacgctactaagatattc
gtgaacggatgctgggtcggcatccacagggatccggatcagttgatggccactttgcgc
aagctgagacggcagatggacatcatcgtgtcggaagtgtcgatgatccgcgacatcagg
gaccgtgaaataaggatttatacggatgcaggcagaatcagtagacccctgctcatagta
gagggacaaaatctcttattgaagaaaagacacatcgatatgctgaaagaaagggactac
aataatgacggatggcaagaattggtaggtagcggagttgtagagtacatagacacactg
gaggaggaaaccgtcatgatagccatgtcaccagacgatctgaggcaggaaaaggagtac
gcgtattgtacgacctacactcattgtgaaattcatccggcaatgattcttggcgtgtgc
gcttccataataccatttcctgatcacaatcaaagtcctaggaatacgtatcagagcgct
atggggaaacaagcaatgggcgtgtacattacaaatttccacgtgcgtatggacacgttg
gctcacgtactatattatcctcacaagccgttggtcactacgcgatccatggagtatctg
agattccgtgagctgccggccggcattaacagcatcgtcgctatcctctgttacacagga
tacaatcaagaagacagcgtcatcttgaacgcgagcgccgttgagagaggcttcttccga
tcggtgttctaccgctcgtacaaggaggcggaatcgaagaagatcggtgaccaggaggaa
cagtttgagaaaccttcacgttctacctgccaaggaatgcgtaatgctatatacgacaag
ttggacgacgacggaatcattgcccctggcattcgcgtgtcgggtgacgacgtgatcata
ggaaaaacaattactctacccgaaacggacgatgagttggacagtacgaccaagcgtttt
acgaaacgcgacgcgtccaccttcttgcgcaacagcgagaccgggatagtcgaccaagtg
atgttgacgttaaacagcgagggatacaagttctgcaagattcgcgtgcgtagtgtgcgc
attccgcagatcggcgacaagttcgcgtcgcgtcacgggcagaagggtacgtgcggaatt
caatacaggcaagaggatatgccgttcacctgtgagggtctcacacccgacattatcatc
aatccccacgccatcccctctcgcatgaccatcggtcacttgatcgagtgcatacaaggg
aaagtttccgctaacaaaggagagatcggtgatgctacaccgtttaacgatgccgtgaat
gtgcaaaagatctcgacgcttctgcaggaatacggttaccaattacgaggaaacgaagtt
atgtacaatggacatacgggtcgcaaaatcaacgcacaagtctttttagggccgacttat
tatcagcgcttgaagcacatggtggacgataagattcatagtagagcaagaggacccgtg
caaattctagttaggcaacctatggaaggtcgcgcgagggacggcggacttcgtttcgga
gagatggaacgtgactgtcagatttctcacggcgcggcgcaatttttgagggaacgtcta
tttgaagtgtcggacccatatcgaattcacatatgcaatttttgcggcctgatagccata
gcaaatttacggaacaacaccttcgagtgcaaaggatgcaaaaacaaaacgcaaatttcg
caaattagattgccgtacgcggcgaagctccttttccaggaactgatggcgatgaatatt
gcacctaggctcatgataaattaa
DBGET
integrated database retrieval system
