Ooceraea biroi (clonal raider ant): 105283375
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Entry
105283375 CDS
T05778
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
obo
Ooceraea biroi (clonal raider ant)
Pathway
obo03013
Nucleocytoplasmic transport
obo03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
obo00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
105283375
03015 mRNA surveillance pathway
105283375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
obo03019
]
105283375
Enzymes [BR:
obo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
105283375
5.6.2.5 RNA 5'-3' helicase
105283375
Messenger RNA biogenesis [BR:
obo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
105283375
mRNA cycle factors
Common to processing body (P body) and stress granule
105283375
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_19
AAA_30
ResIII
SLFN-g3_helicase
UvrD-helicase
NAT10_TcmA_helicase
DEAD
NPHP3_N
ATPase
nSTAND3
SRP54
AAA_22
AAA_16
nSTAND_NTPase5
AAA_10
AAA_7
AAA_32
AAA
AAA_5
Motif
Other DBs
NCBI-GeneID:
105283375
NCBI-ProteinID:
XP_019888567
LinkDB
All DBs
Position
2:7256737..7262012
Genome browser
AA seq
1119 aa
AA seq
DB search
MSVDAYGPSSQTLTFLDTEEADLIGADTQGSEFDFTDFTLPSPSQTQASQHDATQTQSSQ
PIQVNGTNGSSALDLKISGAAQSLAELQFEEEEEEAYYNRDLPDHACKYCGIHEASCVVL
CNVCRKWFCNGRGNTSGSHIINHLVRAKHKEVTLHRDGPLGETVLECYSCATRNVFVLGF
IPAKADSVVVLLCRQPCAAQTSLKDMNWDQEQWKPLIEDRSFLAWLVKIPSEQEQLRARQ
ISAQQINKLEELWRDNVDATFQDLEKPGVDEEPQQVLLRYEDGYQYQNIFGPLVKLEADY
DKRLKESQTQENIEVRWDVGLNKKTIAYFMLAKTDGDMKLMHGDELRLRYLGELHKPWSG
IGHVIKIPDNYGEEVGIELKNNSGAPTECISNFVVDFIWKSTSFDRMQSALRKFAVDDTS
VSAYIYHRLLGHEVEEVLFRCHLPKHFSAPNLPDLNRSQVYAVKHAIQRPLSLIQGPPGT
GKTVTSATIVYQLVKQNGGPVLVCAPSNTAVDQLTEKIHKSNLKVVRLCAKSREAIDSPV
SFLALHNQIKNMETNTELQKLQQLKDETGELSSVDEKRYRLLKKAAEKELLEAADVICCT
CVGAGDPRLHRLKFHSILIDESMQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAA
RAGLSQSLFERLVVLGIRPFRLEVQYRMHPDLSRFPSNFFYEGSLQNGVCADERKLLKID
FPWPAPDKPMFFYVTQGQEEIAGSGTSYLNRTEASNVEKITTRFLRCGVKPEQIGVITPY
EGQRAYLVQYMQYQGSLHSKLYQEIEVASVDAFQGREKDIIIMSCVRSNEHQGIGFLNDP
RRLNVALTRAKYGIIIIGNPKVLSKQPLWNHLLSFYKEQKVLVEGPLNNLKESMIQFAKP
KKLVNAANPGSHFMSTSMYDAREALIPGSVYDRSGAQVNGAQSHNPYYQRNVPLDIFSRT
HDTISYISPERAQAAMNNMPVPVGMFMNMAHVPPRFYNQHQQALQARQNQRNRRGAAAAK
GKIGSRMGKLSQTEQNTQPYSQPGLPLTQGTTQGMSQPGFSLSQPGLSQAELSQDSFAVG
EFQSQMDGLLSQDSTYQGDRSGFYQSGQSQAGGQFSQPY
NT seq
3360 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtcgacgcgtacggacctagcagccagaccctcacgttcctcgacaccgaggaa
gcggacctgatcggcgcggacacgcagggcagcgagttcgacttcacggacttcaccctg
ccgtcgccgagtcagacccaggcctcgcagcacgacgcgacccaaacgcagtccagtcag
cccatccaggttaatggaacgaatggtagttcagcattggacttgaagatctctggggca
gcccagagtctcgctgagttgcagtttgaagaggaggaggaggaagcgtattataatcgt
gatttgcctgaccatgcatgtaaatactgcggtatccacgaggcatcctgcgtggttcta
tgcaatgtctgtcgcaagtggttttgcaacggacgcggtaatacatcaggctcacacatt
atcaatcatcttgtccgtgctaaacataaggaggtcactttgcacagggatggtcctctg
ggcgaaaccgttttggaatgttattcctgtgccacgagaaatgtttttgtactgggcttt
attcctgcaaaggccgattccgtagtggtgctgctttgtcggcagccgtgtgcggcgcaa
acttccttaaaagatatgaactgggatcaggaacaatggaaaccgttgatcgaagatcgt
agcttcctggcttggttggtaaagatcccgtccgaacaggaacagttacgagccagacaa
atctccgcgcaacaaattaataaattggaggagttgtggcgcgataacgttgacgcgact
ttccaagatctcgagaagcccggcgtggacgaggagccgcagcaagttttgttgcgctac
gaggacgggtaccagtaccaaaatattttcggaccactcgtgaagctggaagcggattac
gataaacgcctgaaggagtcgcaaacgcaagagaacatcgaagtacgatgggacgtcgga
ttgaacaagaagaccattgcgtacttcatgctggccaaaacggacggtgatatgaaattg
atgcacggggacgagctcagacttcgttacctgggtgagcttcacaaaccttggtccggc
attgggcacgtgattaagattcccgataactacggggaagaggtcgggatcgagttgaaa
aataattccggcgcgccaacggaatgcatcagtaactttgtcgttgatttcatttggaag
agcacgagttttgaccggatgcagtctgcattacgcaaatttgctgtggatgacacatcg
gtgtcggcgtatatatatcacagattactcgggcacgaagtggaagaggtattgttccgt
tgtcatctccccaagcactttagcgcgccaaatctgccagacctgaacagatcgcaagta
tacgccgttaagcacgcgatccaacgaccgttatcgctgatccaaggaccgcccgggaca
ggcaagaccgtgacgagcgccacgatagtctatcaactggtgaagcagaatggcggtccg
gttcttgtgtgcgcgccttcaaacaccgctgtcgatcagttgacggaaaagatacacaaa
tcgaatctgaaagttgtacgattgtgcgcgaaatcgcgggaggccatcgactcgcccgtc
agcttcctcgcgctgcacaatcagataaagaacatggagacgaacaccgagctgcagaag
ttgcagcaactgaaggacgagacgggcgaattgtcgagcgtcgacgagaagcgctataga
cttttgaagaaagcggcggaaaaagagctgctggaagcagccgatgtaatttgttgcacg
tgtgttggtgctggcgatccacggttgcatcggctgaagtttcactctattcttatcgac
gagagcatgcaggccaccgagccggagtgcatggtgcctgttgttctgggtgccaagcaa
ctgatcctagtcggagatcactgtcaattgggcccagtcgtgatgtgcaagaaagccgcc
cgagcaggcctgtcgcagtcgttattcgagagactggtagtacttggaattcgacccttc
cgcttggaagtgcagtaccgcatgcatcctgacctctcgcgattcccgtcgaactttttc
tacgagggctctctgcagaatggcgtttgcgccgacgagaggaaactgctgaagattgat
tttccctggcctgcaccggacaaaccgatgtttttctacgtcacccagggccaggaggag
atagctggcagtggaacgtcttacctgaatcgcacggaagcttctaacgtggagaagatt
acgacgcggtttctgcgttgcggcgtgaagccggagcagatcggagtgataaccccatac
gagggtcagcgcgcttatctcgtgcaatatatgcagtatcaaggttccctgcactcaaaa
ctgtatcaagagattgaagtagcgagcgtggacgccttccaaggacgcgagaaggatata
ataataatgtcctgcgtgcgatccaacgagcatcaaggcattggattcttgaatgatcct
agaagattgaacgtggcgttgacccgcgccaagtacggtatcatcatcatcggaaatccc
aaggtgctgtcgaagcaacctttgtggaaccatctgcttagcttttacaaagagcagaag
gtattggtcgagggaccgttgaacaatctgaaggaatctatgattcagttcgccaaaccg
aagaagctcgtgaacgcggccaatccgggttcgcacttcatgtccacgtcaatgtacgat
gcgcgcgaggccctgatccccggctccgtgtacgatcgctcgggcgcgcaggtgaatggc
gcgcagagccataatccgtactatcagaggaacgtaccactcgacatcttcagccgtact
cacgacaccatcagctacatcagtccggagcgtgcccaggcggcgatgaacaacatgcca
gtgccagtaggcatgtttatgaacatggcgcatgtaccgccgcgcttctacaaccagcat
caacaggccttgcaggcgcgtcagaatcagaggaaccggcgcggtgctgcagcggcgaag
ggcaagattggctcgcgcatgggcaagctgagccagacggaacagaacacccagccgtac
agccaacccggtttgccactgacccaaggtacgactcaaggcatgtcccagcccggattc
agcttgtcgcagccgggactgagccaggcagaactctcccaggactcgttcgcggttggc
gagttccaatcacagatggatggcctgttgtcacaggattcgacttaccagggtgatcgg
agcgggttctatcagtccgggcaatcgcaagccgggggacaattctcccagccctactga
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