KEGG   Ooceraea biroi (clonal raider ant): 105286187
Entry
105286187         CDS       T05778                                 
Name
(RefSeq) polyadenylate-binding protein 1
  KO
K13126  polyadenylate-binding protein
Organism
obo  Ooceraea biroi (clonal raider ant)
Pathway
obo03015  mRNA surveillance pathway
obo03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:obo00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    105286187
  09123 Folding, sorting and degradation
   03018 RNA degradation
    105286187
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:obo03019]
    105286187
   03041 Spliceosome [BR:obo03041]
    105286187
Messenger RNA biogenesis [BR:obo03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     105286187
   mRNA cycle factors
    Stress granule specific factors
     105286187
Spliceosome [BR:obo03041]
 Complex C
  Other components
   Complex C specific factors
    105286187
SSDB
Motif
Pfam: RRM_1 MLLE RRM_7 RBD_DEAH11 RRM_10 RRM_occluded Nup35_RRM_2 POP1_C
Other DBs
NCBI-GeneID: 105286187
NCBI-ProteinID: XP_011349245
LinkDB
Position
10:5956368..5964480
AA seq 633 aa
MNPGAPNYPMASLYVGDLHTDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFS
AFGNILSCKVAQDESGASKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYVGKFIPRKER
EKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMSKDDGKSRGFGFVAFE
DPDAAERAVIELNGKEIAENKCMYVGRAQKKAERQQELKRKFEQLKIERLNRYQGVNLYV
KNLDDTIDDERLRKEFTPFGTITSAKVMMEEGRSKGFGFVCFSQPEEATKAVTEMNGRIV
GSKPLYVALAQRKEDRKAHLASQYMQRMANVRMQQMGQIFQPGNAGSYFVPTIPQPQRFY
GPAQMAQIRATPRWPAQPNQVRPNAQTGSSGFAAMQAAPFRPAPRAPAAQASALRNSMSA
RPITGQQAVGGANIQSRSMAGPAVGVSPGQSRPSNYKYTANMRNPPQAAMAMPTQAPVQQ
AVHIQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQCMYPSLTGKITGMLLEIDNSELLH
MLEHNESLKAKVEEAVAVLQAHQAKQAVAPKKE
NT seq 1902 nt   +upstreamnt  +downstreamnt
atgaatcccggtgcgcccaactaccccatggcatcgctctacgtcggtgatttacatacc
gacatcaccgaggctatgctgttcgagaagttttcatcggccggacccgtgctgtccata
cgcgtctgccgtgacatgatcacccgtcgctcgctcggatacgcttatgtcaacttccaa
caaccggctgatgctgaacgcgccctcgatacgatgaactttgatatgataaaggggcgg
cctattcgaattatgtggtcccagcgagatccttccctccgcaaatcaggcgttggaaat
gtatttataaagaacctagacaaaaatatagacaataaagcaatgtacgataccttctcc
gcgtttggtaacatattaagctgcaaggtagcgcaagatgaatcgggcgcctctaagggt
tatggctttgttcatttcgagaccgaggaagccgcgaataaatccatcgataaagtcaac
ggcatgttgttgaacggcaagaaggtttatgttggaaagttcattccgcgtaaggaacgc
gaaaaggagttgggcgagaaggccaagcttttcacgaatgtctacgtgaagaactttggc
gaagatatgacggatgacaagctgaaggagatgtttgagaagtacgggaccattaccagt
cacaaagtgatgagcaaggacgacggtaaatcgcgcggttttggattcgtcgcgttcgag
gacccagacgcggctgagcgagcggtaatcgagctgaatggcaaggagattgccgagaac
aagtgcatgtacgtcggacgcgctcagaagaaggccgagcggcagcaggagctgaaacgg
aagttcgaacagctgaagatcgagcgtctgaaccgctatcagggcgtgaacttgtacgtg
aagaatctggacgacaccatcgacgacgagcgtctgcgcaaggagttcacgcccttcggt
acaattacatccgccaaggtgatgatggaggagggacgtagcaagggcttcggattcgtc
tgcttctcccagccggaagaggcgaccaaagcggtgaccgagatgaacggacgcatcgtg
ggttccaagcccctttacgttgctctggcgcaacgcaaggaggatcgtaaagctcatctt
gcttcgcaatacatgcagcgcatggcgaatgtacgcatgcaacagatgggccagatattc
cagcctggtaacgcaggtagttacttcgtccccacgataccgcagccgcaacgtttctac
gggcctgctcagatggcacagattcgcgctactccgcgctggccggcacaaccgaatcaa
gtacggccaaacgcccagaccggcagctctggattcgcagcgatgcaagctgcgcctttc
agaccggcaccgcgcgctcccgctgcgcaggctagcgccttgcgtaacagcatgtctgcc
agacctattacaggtcaacaagcggttggaggcgccaatatacagagccgttccatggct
ggccctgctgtcggggtctcgcccggtcagagccgtccgtcgaactacaaatacaccgcg
aacatgcgcaatccaccgcaagcggccatggcgatgcccactcaagctcctgtgcaacag
gctgtccacatccagggccaagaaccactcactgcatcgatgctggctgcagcaccaccg
caagaacagaaacagatgttgggcgaacgactgttcccattgatccagtgcatgtacccg
tcgctgactggcaagatcaccggtatgctgttggagatcgacaacagcgagctgcttcat
atgttggaacacaacgagtcgctgaaggctaaagtcgaggaagctgtggccgtgctgcaa
gcccatcaagcaaagcaagcagttgcaccgaaaaaagaataa

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