Ooceraea biroi (clonal raider ant): 105286187
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Entry
105286187 CDS
T05778
Name
(RefSeq) polyadenylate-binding protein 1
KO
K13126
polyadenylate-binding protein
Organism
obo
Ooceraea biroi (clonal raider ant)
Pathway
obo03015
mRNA surveillance pathway
obo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
obo00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
105286187
09123 Folding, sorting and degradation
03018 RNA degradation
105286187
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
obo03019
]
105286187
03041 Spliceosome [BR:
obo03041
]
105286187
Messenger RNA biogenesis [BR:
obo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
105286187
mRNA cycle factors
Stress granule specific factors
105286187
Spliceosome [BR:
obo03041
]
Complex C
Other components
Complex C specific factors
105286187
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_7
RBD_DEAH11
RRM_10
RRM_occluded
Nup35_RRM_2
POP1_C
Motif
Other DBs
NCBI-GeneID:
105286187
NCBI-ProteinID:
XP_011349245
LinkDB
All DBs
Position
10:5956368..5964480
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AA seq
633 aa
AA seq
DB search
MNPGAPNYPMASLYVGDLHTDITEAMLFEKFSSAGPVLSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDMIKGRPIRIMWSQRDPSLRKSGVGNVFIKNLDKNIDNKAMYDTFS
AFGNILSCKVAQDESGASKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYVGKFIPRKER
EKELGEKAKLFTNVYVKNFGEDMTDDKLKEMFEKYGTITSHKVMSKDDGKSRGFGFVAFE
DPDAAERAVIELNGKEIAENKCMYVGRAQKKAERQQELKRKFEQLKIERLNRYQGVNLYV
KNLDDTIDDERLRKEFTPFGTITSAKVMMEEGRSKGFGFVCFSQPEEATKAVTEMNGRIV
GSKPLYVALAQRKEDRKAHLASQYMQRMANVRMQQMGQIFQPGNAGSYFVPTIPQPQRFY
GPAQMAQIRATPRWPAQPNQVRPNAQTGSSGFAAMQAAPFRPAPRAPAAQASALRNSMSA
RPITGQQAVGGANIQSRSMAGPAVGVSPGQSRPSNYKYTANMRNPPQAAMAMPTQAPVQQ
AVHIQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQCMYPSLTGKITGMLLEIDNSELLH
MLEHNESLKAKVEEAVAVLQAHQAKQAVAPKKE
NT seq
1902 nt
NT seq
+upstream
nt +downstream
nt
atgaatcccggtgcgcccaactaccccatggcatcgctctacgtcggtgatttacatacc
gacatcaccgaggctatgctgttcgagaagttttcatcggccggacccgtgctgtccata
cgcgtctgccgtgacatgatcacccgtcgctcgctcggatacgcttatgtcaacttccaa
caaccggctgatgctgaacgcgccctcgatacgatgaactttgatatgataaaggggcgg
cctattcgaattatgtggtcccagcgagatccttccctccgcaaatcaggcgttggaaat
gtatttataaagaacctagacaaaaatatagacaataaagcaatgtacgataccttctcc
gcgtttggtaacatattaagctgcaaggtagcgcaagatgaatcgggcgcctctaagggt
tatggctttgttcatttcgagaccgaggaagccgcgaataaatccatcgataaagtcaac
ggcatgttgttgaacggcaagaaggtttatgttggaaagttcattccgcgtaaggaacgc
gaaaaggagttgggcgagaaggccaagcttttcacgaatgtctacgtgaagaactttggc
gaagatatgacggatgacaagctgaaggagatgtttgagaagtacgggaccattaccagt
cacaaagtgatgagcaaggacgacggtaaatcgcgcggttttggattcgtcgcgttcgag
gacccagacgcggctgagcgagcggtaatcgagctgaatggcaaggagattgccgagaac
aagtgcatgtacgtcggacgcgctcagaagaaggccgagcggcagcaggagctgaaacgg
aagttcgaacagctgaagatcgagcgtctgaaccgctatcagggcgtgaacttgtacgtg
aagaatctggacgacaccatcgacgacgagcgtctgcgcaaggagttcacgcccttcggt
acaattacatccgccaaggtgatgatggaggagggacgtagcaagggcttcggattcgtc
tgcttctcccagccggaagaggcgaccaaagcggtgaccgagatgaacggacgcatcgtg
ggttccaagcccctttacgttgctctggcgcaacgcaaggaggatcgtaaagctcatctt
gcttcgcaatacatgcagcgcatggcgaatgtacgcatgcaacagatgggccagatattc
cagcctggtaacgcaggtagttacttcgtccccacgataccgcagccgcaacgtttctac
gggcctgctcagatggcacagattcgcgctactccgcgctggccggcacaaccgaatcaa
gtacggccaaacgcccagaccggcagctctggattcgcagcgatgcaagctgcgcctttc
agaccggcaccgcgcgctcccgctgcgcaggctagcgccttgcgtaacagcatgtctgcc
agacctattacaggtcaacaagcggttggaggcgccaatatacagagccgttccatggct
ggccctgctgtcggggtctcgcccggtcagagccgtccgtcgaactacaaatacaccgcg
aacatgcgcaatccaccgcaagcggccatggcgatgcccactcaagctcctgtgcaacag
gctgtccacatccagggccaagaaccactcactgcatcgatgctggctgcagcaccaccg
caagaacagaaacagatgttgggcgaacgactgttcccattgatccagtgcatgtacccg
tcgctgactggcaagatcaccggtatgctgttggagatcgacaacagcgagctgcttcat
atgttggaacacaacgagtcgctgaaggctaaagtcgaggaagctgtggccgtgctgcaa
gcccatcaagcaaagcaagcagttgcaccgaaaaaagaataa
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