Ooceraea biroi (clonal raider ant): 105286974
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Entry
105286974 CDS
T05778
Name
(RefSeq) CCR4-NOT transcription complex subunit 6-like isoform X1
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
obo
Ooceraea biroi (clonal raider ant)
Pathway
obo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
obo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
105286974
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
obo03019
]
105286974
Enzymes [BR:
obo01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
105286974
Messenger RNA biogenesis [BR:
obo03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
105286974
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
105286974
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_8
LRR_14
LRR_4
LRR_1
LRR_LRWD1
Motif
Other DBs
NCBI-GeneID:
105286974
NCBI-ProteinID:
XP_026826449
LinkDB
All DBs
Position
6:complement(9678379..10279986)
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AA seq
549 aa
AA seq
DB search
MSRNHKDKYENSNPRRIYTLMGSEDLQSGKKSHWSELEITGSIRNLSPNLWQMIHLTALY
LNDNSLQRVPAEIGRLVNLRILDLSSNKLRSLPAELGDLIYLRELLLNQNYLRVLPYELG
KLFQLQVLGLQGNPLSKEVMALYGNGEPAGTNKLLSFMLDHLQVTANPPPQRPWIPLTRP
NRTRPTCIFTVMCYNVLCDKYATRQMYGYCPSWALEWDYRKKGILDEIRHYAADIISLQE
VETDQFYNFFLPELKHDGYDGIFSPKSRAKTMAENDRKYVDGCAIFYRTAKFSLIKEHLV
EFNQLAMANAEGSDNMLNRVMPKDNIGLAALLRTKEAAWDNGVPSDPTQVQQPILVCTAH
IHWDPEFCDVKLIQTMMLSNELRSILDQAGQSFRPGHKPDSSNVQLLLCGDFNSLPDSGV
IEFLTSGRVAADHRDFKDLAYKSCLQKISGCDKPNEFTHSFKLASAYSEDIMPYTNYTFE
FKGIIDYIFYSKQSMVPLGLLGPLSPEWFKEHKVVGCPHPHVPSDHFPLLVELEMTPTVG
TSNGLISRR
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atgtctcgcaatcacaaggacaagtatgaaaactctaacccacgtcgtatatacacactt
atgggttcggaggacctgcagtcggggaagaaatctcattggtcggagttggagataaca
ggcagcataaggaacctgagccccaacctgtggcaaatgatccacttgacagccttgtat
ctgaatgacaatagtctgcagagagtaccggcagagatcggtcgtcttgtcaacttgcgc
attctagatctcagcagtaacaagctacgcagtctgcctgctgaactgggggaccttatc
tacctcagggagttgttattgaaccaaaactaccttcgcgtgttaccgtatgaattaggc
aagttgttccagttacaagtacttggtcttcaaggaaatccgctcagcaaggaggtgatg
gcgctgtacgggaacggagagcctgcagggacgaacaagctgctgtcattcatgctggac
cacttacaagttacggcgaaccctccacctcagcgaccgtggattccattgacaaggcca
aacaggactaggccaacttgcatattcacggtaatgtgctacaatgtgctctgtgacaag
tacgctacgcggcagatgtacggctactgtccaagctgggcgttggaatgggattaccgg
aagaaaggtatcctcgacgagatacggcattatgccgcggacatcattagcctgcaggag
gtcgagacggaccaattctacaacttcttcctgccggaactcaaacacgacggttacgat
ggcatattttcacccaagtcccgcgcgaagacgatggcggaaaacgaccgcaaatacgtc
gatggctgcgctattttttacagaaccgccaaattttctctgataaaggaacatttagtc
gaattcaaccaattggcaatggcgaacgcggaaggttcagacaatatgctgaatcgagtt
atgcccaaagacaacattggactcgctgcattacttagaactaaggaagctgcttgggac
aatggtgttccatctgatccgacacaagtgcaacaaccaatcttggtttgtacggcgcac
attcactgggatcccgaattctgcgacgtaaaattgatacaaacgatgatgctgagcaat
gaattacgttccattttggaccaagctggccagtcgttcagacccggtcacaagcctgac
tcttccaacgttcaattgctgctttgcggtgacttcaattccttacctgattctggtgtg
attgaatttcttacatccggtcgtgtggcggccgaccatcgcgactttaaggacttagcg
tataaatcgtgcttgcaaaagatctccggctgcgataagcccaacgaattcacgcattct
ttcaagcttgcatccgcctacagcgaagacatcatgccctataccaactacacattcgag
tttaaaggcataatagattacattttttactcgaagcaaagcatggtgccgctaggcctc
cttggcccactgagcccggaatggtttaaggaacataaggtagtaggatgtccccatccc
catgttccatccgatcactttcctctgttagtggagttggagatgacaccgacagtagga
acaagcaatggtttgatctcacgcaggtag
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