Ooceraea biroi (clonal raider ant): 105287180
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Entry
105287180 CDS
T05778
Name
(RefSeq) probable histone-binding protein Caf1 isoform X1
KO
K10752
histone-binding protein RBBP4
Organism
obo
Ooceraea biroi (clonal raider ant)
Pathway
obo03082
ATP-dependent chromatin remodeling
obo03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
obo00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
105287180
03083 Polycomb repressive complex
105287180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
obo03036
]
105287180
Chromosome and associated proteins [BR:
obo03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
105287180
Histone modification proteins
HAT complexes
HATB complex
105287180
HDAC complexes
Sin3A-HDAC complex
105287180
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
105287180
PRC2.2
105287180
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
105287180
Heterochromatin formation proteins
Other heterochromatin formation proteins
105287180
Chromatin remodeling factors
NuRD complex
105287180
NuRF complex
105287180
NuRF complex (fruit fly)
105287180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40
CAF1C_H4-bd
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WDR55
WD40_WDHD1_1st
EIF3I
Beta-prop_WDR75_1st
WD40_MABP1-WDR62_2nd
Beta-prop_EML
WD_LRWD1
Beta-prop_WDR90_POC16_2nd
Beta-prop_DCAF12
WD40_RFWD3
Beta-prop_WDR19_1st
ANAPC4_WD40
eIF2A
Beta-prop_RIG_1st
WD40_MABP1-WDR62_1st
Beta-prop_SPT8
Beta-prop_IFT140_1st
NBCH_WD40
MIOS_WD40
Beta-prop_IFT122_1st
Beta-prop_DCAF4
Motif
Other DBs
NCBI-GeneID:
105287180
NCBI-ProteinID:
XP_011350969
LinkDB
All DBs
Position
6:10827799..10831445
Genome browser
AA seq
441 aa
AA seq
DB search
MMADKDGEEVSQRRSFFSGAEGFDDAVEERIINEEYKIWKKNTPFLYDLVMTHALEWPSL
TAQWLPDVTRPEGKDYSVHRLILGTHTSDEQNHLLIASVQLPNEDAQFDASHYDNEKGEF
GGFGSVSGKIEIEIKINHEGEVNRARYMPQNPCVIATKTPSSDVLVFDYTKHPSKPDPNG
ECHPDLRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKENRVIDAKTIFTG
HTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRCNNTSKPSHTVDAHTAEVNCLSFNPYS
EFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVW
DLSKIGEEQSSEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQMA
ENIYNDEEPETPGSEIETGGS
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atgatggcagacaaggatggtgaagaagtatctcagcgtcgttctttcttttctggtgca
gaaggctttgatgatgcggtggaggaacgaatcattaatgaggaatataagatctggaag
aagaacactccatttctatatgacctagtaatgacgcatgccttggaatggccatcattg
acggcgcaatggctgcctgacgttaccagacccgaaggaaaggactattcagtccatcgg
ctaattctgggcactcatacgtcagacgagcagaatcacttgctcatcgcaagcgttcag
ttgccgaacgaagacgcgcaattcgatgcctcccactatgacaatgagaagggcgaattc
ggcggttttggctctgtgagcggcaagatcgagatcgagataaagatcaatcacgaaggc
gaggtgaacagagcgcgatacatgccgcagaacccgtgcgtgatcgcgacgaagacgccc
tccagcgacgtgctcgtgttcgactacacgaagcatcccagtaaaccggatcccaacgga
gagtgtcatccagacttgcgattacgaggccatcagaaggaaggatacggtctttcatgg
aatcccaatttgaacggatacctgctgagtgcttcagacgaccatacaatttgcctatgg
gatatcaatgctacgccaaaagagaatcgcgttatcgacgcgaaaaccattttcacggga
cacacggctgtagtcgaggacgtcgcctggcatctgctgcatgagtcgctctttggttcg
gtcgccgatgatcagaagcttatgatctgggatacaagatgtaacaacaccagcaagccg
agtcacaccgttgacgctcatactgcggaagtaaactgtctgagcttcaacccgtactcc
gaatttatactagctaccggtagcgcggataagactgtcgcgctttgggatttgagaaat
ctcaaattgaagttgcactcatttgaatcacacaaagacgagatcttccaagtgcagtgg
tccccgcacaatgagaccatattagcaagcagtggtaccgatagacggttgcacgtttgg
gacttgagcaaaatcggggaagagcagtctagtgaggatgctgaggacggaccacctgaa
ttgctgttcatacacggaggccataccgctaagatcagtgatttctcatggaacccgaat
gaaccgtgggtgatctgctcagtgtcggaggataatataatgcaggtatggcagatggca
gaaaatatttacaacgacgaagagcccgagacaccaggaagtgagattgaaactggtggc
tcataa
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