Ooceraea biroi (clonal raider ant): 105287697
Help
Entry
105287697 CDS
T05778
Name
(RefSeq) pre-mRNA-processing factor 40 homolog A isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
obo
Ooceraea biroi (clonal raider ant)
Pathway
obo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
obo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
105287697
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
obo03041
]
105287697
Spliceosome [BR:
obo03041
]
Complex A
U1 snRNP components
U1 related factors
105287697
Complex B
105287697
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
RhoGAP-FF1
Spherulin4
HVO_2833_C
Propep_M14
Motif
Other DBs
NCBI-GeneID:
105287697
NCBI-ProteinID:
XP_011351709
LinkDB
All DBs
Position
5:complement(3110492..3117379)
Genome browser
AA seq
838 aa
AA seq
DB search
MASNDGIPPPGAVTGFPSATPNIASSFVPPIMPTAPFIPPPSLPPGPPGIMPPQFSIPPP
GFTFPITAAAPPEPGVIAASSQITAPGIPPPSPLGNGPDATAAMSVSATEKKTDWSEHKA
PDGRTYYYNNITKQSLWEKPDELKSSNELLLSQCPWKEYKSENGKVYYHNVTTKESRWTI
PPELEELKTRIIAEEAAAAAAAVVANATNSNIVPVAMQHLSPNVPTVSQTSTPEPGGKSA
IEQAMAATLAAINIPTPPAKPDEDSNSAKGSTNDSRTSTPEPKMQFKDKKEAIEAFKELL
RERDVPSNATWEQAVKLIQNDPRYPQMKKLNERKQAFNSYKTQKLKEEREQERLRLKKAK
EDLEQFLLDNDRMMSTTKYYKCEELFGNLEVWRAVGDSDRRDIYEDVIFNLAKREKEEAK
QLKKRNTKRLAQVLDTMTEVTYRTTWQEAQALLLQYPAFAEDADLLEMDKEDALIVFENH
IRQLEKDEEEEKECEKKRRKRQERKNRDGFIYLLDELHEQGKLTSMSLWVELYPMLSADL
RFSAMLGQSGSTPLDLFKFYVEDLKSRFHDEKKIIREILKDKNFEVQVNTTFEEFATVVC
EDRKSATLDAGNVKLTYNLLLEKAEAREKERVKEETRKFKKLETGFKNLLKTLNVDYQMT
WEDVRTKIEEEPDFKAITLESERIRIFKEYQHELEESCSHHHIRSKKKKAKKLKHKSRSR
SHSDSEGSEKGMRKKSRHKSRSPSIPSKSDSSESETRKSKKKKNKKKRGRSHSRSHSRLP
SSEESPERRRKEEKHRRPSIHSEGSVTETNEHHELSEDELEKQRAQLLRELQMQQEEN
NT seq
2517 nt
NT seq
+upstream
nt +downstream
nt
atggcttcaaacgacggcattccgccacccggcgctgtaacaggattcccgtcggcgacg
ccaaacattgcatctagctttgtgccacccattatgcccacggcgcccttcattccgcca
cccagtttaccgccaggtcctccgggcataatgccaccacagttttccatacccccgcca
ggttttaccttccctatcaccgcggcagctcccccggagcctggagtaatagctgcatcg
tcacagataacagcgccagggattccacccccatcgcctctcggcaacggccccgacgcc
accgcggcaatgtccgtctccgcgacggagaagaagaccgattggagcgagcacaaggca
ccggacggcaggacttattactataacaacatcacgaagcagtcattgtgggagaaaccg
gatgaacttaaatcctcgaacgagttgctgttatctcaatgtccgtggaaagagtacaag
tcggagaacggcaaggtgtactatcacaacgtgaccaccaaggagtctaggtggacgata
ccgccggaattggaagaactgaaaacgcgaatcatcgccgaggaagcggcggcggccgcc
gcggcggtcgtggcgaacgccaccaactccaatatagttcccgtggctatgcagcatcta
tcgccgaatgtgccgactgtgtcgcagaccagcacaccggagccgggcggaaagtccgcg
atcgagcaggcgatggccgcgaccctcgcagcgatcaatatcccgacgcctcccgcgaag
ccagacgaggacagtaattcggcaaagggctcgactaatgatagtcgcaccagcacgccc
gagccgaagatgcagttcaaggacaagaaggaggcgatcgaggcgttcaaggaattgctg
agggagagggacgtgccgtcgaacgccacgtgggagcaggcggtgaaattgatacaaaat
gatcccagatacccgcaaatgaagaaactcaacgagcgtaagcaagctttcaattcgtac
aagacgcagaaattgaaagaggagcgcgagcaagagagacttagattgaaaaaggccaag
gaggacctggagcaattcttgttggataacgacaggatgatgagcacgaccaagtattac
aagtgcgaggagctgtttggtaatttggaagtctggcgcgcggttggtgattctgatcgc
cgtgatatctacgaagacgtgatcttcaatctggcgaaacgtgagaaggaggaggcgaag
caactgaagaaacggaacaccaagagactggcgcaagtcctggacaccatgaccgaggtg
acgtacaggacgacgtggcaggaagcacaagcgctattgttgcaatatccagctttcgcg
gaagacgcggatctgttggagatggacaaggaggatgccctgattgtctttgagaatcac
attcgccaactggagaaggacgaggaggaggagaaggagtgcgaaaagaaacgcaggaaa
cggcaggagaggaagaacagggacggcttcatatatctactcgatgagcttcacgaacaa
ggcaaactcacgtccatgtccttgtgggtagaattgtatccaatgctgtccgccgattta
cggttctcggcaatgctcggacagtcgggttcgactccgttggatctcttcaaattctac
gtcgaggatctcaagtctcggttccacgatgagaagaagattatccgcgaaatactcaaa
gataagaactttgaggtgcaggtcaacacgaccttcgaggagttcgccacggtcgtgtgc
gaggatcgaaagtcggccactctcgacgccggcaacgttaaactcacgtataatctactg
ctggagaaggcagaggcgcgcgagaaggaacgcgtcaaggaggaaacgagaaagttcaaa
aagttggagaccggcttcaagaatttgctgaaaacgctaaacgtcgattatcagatgacg
tgggaggacgtgaggacgaaaatcgaggaggagccggacttcaaagcgatcactttggag
agcgagaggatacggatattcaaagagtaccaacacgaactcgaggagagttgcagtcac
caccacattaggagcaagaagaagaaggcgaagaaattgaaacacaagtcgcgatcgcgt
tcgcacagcgattcggaaggtagcgagaaaggcatgaggaagaagtcgcggcacaagtca
cgttcacccagtatcccgagcaagtcggacagttccgagtcggaaacgagaaagtcgaag
aaaaagaagaacaagaagaagaggggtcgcagtcattcccgctcacactcgagacttcca
tcttccgaggagtctccggagaggagacggaaggaggagaagcacaggaggccttcgatc
cacagcgagggatcggtcacggagaccaacgagcaccacgagctctccgaggacgagctg
gagaaacagagagcgcagctcctgcgcgagttgcaaatgcagcaagaggagaactag
DBGET
integrated database retrieval system
