Ooceraea biroi (clonal raider ant): 113563296
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Entry
113563296 CDS
T05778
Name
(RefSeq) LOW QUALITY PROTEIN: ATP-dependent RNA helicase WM6-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
obo
Ooceraea biroi (clonal raider ant)
Pathway
obo03013
Nucleocytoplasmic transport
obo03015
mRNA surveillance pathway
obo03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
obo00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
113563296
09122 Translation
03013 Nucleocytoplasmic transport
113563296
03015 mRNA surveillance pathway
113563296
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
obo03019
]
113563296
03041 Spliceosome [BR:
obo03041
]
113563296
Enzymes [BR:
obo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
113563296
Messenger RNA biogenesis [BR:
obo03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
113563296
Spliceosome [BR:
obo03041
]
Complex C
Other components
EJC/TREX
113563296
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
113563296
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
113563296
NCBI-ProteinID:
XP_026830523
LinkDB
All DBs
Position
13:complement(8619989..8624979)
Genome browser
AA seq
448 aa
AA seq
DB search
MNAFSARSLFPCDIFNSLLPEGTMADNDDLLDYEDEEQTEQVVDGSGDVPAKKEVKGTYV
SIHSSGFRDFLLKPEILRAIVDCGFEHPSEVQHECIPQAVLXMDILCQAKSGMGKTAVFV
LATLQQLELTENQVYVLVMCHTRELAFQISKEYERFSKYMPHVKVGVFFGGLPIQKDEDF
LKTVCPHIVVGTPGRILALVRNKKLNLKHLKHFILDECDKMLELLDMRRDVQEIFRSTPH
SKQVMMFSATLSKEIRPVCKTTFFVQPMEVYVDDEAKLTLNGLQQHYVKLKENEKNKKLF
ELLDVLEFNQVVIFVKSVQRCMALAQLLTEQNFPAIGIHRGMTQEERLSRYQQFKDFQKR
ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITLVSDENDAKI
LNDVQERFDVNITELPDEIDLASYIEGR
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atgaacgctttttcggcgagatcgttattcccgtgcgatatattcaactcgctgcttcct
gaaggcacaatggcagacaacgatgatcttctggactacgaggatgaggagcagactgag
caagtcgttgacgggagtggagatgtacctgcaaagaaagaagtaaagggaacgtacgtc
tcgatccacagtagtggattcagggacttcctccttaaacccgagatcctacgtgccatt
gttgattgcggcttcgaacatccatctgaagtgcaacatgaatgtatcccccaagccgtg
cttngtatggatatcctgtgccaagcaaagtctggaatgggtaaaactgctgtgttcgtg
ttggcgacacttcagcaactggagttaacagagaatcaagtctacgtcttggtgatgtgt
cacactcgagaactggcctttcaaatcagcaaggagtacgagaggtttagcaagtacatg
ccgcacgtgaaagttggcgttttcttcggtggtttgcctattcagaaagatgaggatttc
ctaaaaaccgtctgtccccacattgtcgtcggtacccctggtcgtatcctcgctcttgtc
cggaataagaaactcaacctgaaacacttgaagcactttatacttgacgagtgcgacaag
atgctggaattgctagatatgcgccgggacgtacaagagatattccggagcaccccgcac
agcaagcaagtcatgatgttcagcgcgacattgtccaaggagatacgtccagtctgcaaa
acaacattctttgtgcagcccatggaagtatatgtcgatgacgaggcgaagctcaccttg
aacggtctgcagcaacattacgttaaattgaaggaaaacgagaagaacaagaagttgttt
gagctacttgacgtacttgagtttaatcaggttgtcatatttgtcaagtcagtacagaga
tgtatggcattagcgcaactattgacagaacagaatttcccagcgattggaattcaccga
ggcatgacgcaggaggagcggctctccagatatcaacagttcaaagattttcaaaagcgt
attttggtggcgacaaatctgtttggacggggcatggatatcgaacgcgtgaacattgta
ttcaattatgacatgccagaagattccgacacgtacctgcatagggtagcacgtgctgga
cgttttggtaccaagggtcttgccattacattagtaagcgacgagaatgacgccaagata
ctcaatgacgtccaggaaagatttgacgtaaatatcacggaattaccggacgaaatagat
ctcgcttcttacatcgaaggacgataa
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