Oryza brachyantha (malo sina): 102700027
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Entry
102700027 CDS
T02995
Name
(RefSeq) spliceosome-associated protein 130 A-like
KO
K12830
splicing factor 3B subunit 3
Organism
obr
Oryza brachyantha (malo sina)
Pathway
obr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
obr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102700027
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
obr03021
]
102700027
03041 Spliceosome [BR:
obr03041
]
102700027
03036 Chromosome and associated proteins [BR:
obr03036
]
102700027
Transcription machinery [BR:
obr03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
102700027
Spliceosome [BR:
obr03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
102700027
Complex B
102700027
Complex C
U2 SnRNP specific factors
102700027
Chromosome and associated proteins [BR:
obr03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
102700027
TFTC complex
102700027
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Motif
Other DBs
NCBI-GeneID:
102700027
NCBI-ProteinID:
XP_015689426
LinkDB
All DBs
Position
2:1503306..1508811
Genome browser
AA seq
1233 aa
AA seq
DB search
MYLYSLTLQRATGAVCAVIGSFSGRDSKKSSGSGSSSSSSTQEIAVARGTTLELLRPDPE
TGRLRTLLSVDVFGAIRSLAQFRLTGATKDYLVVGTDSGRLVILEYSPDRNRLDKVHQET
FGKSGCRRIVPGQLLAVDPKGRALCIAALEKQKLVYVLNRDAAARLTISSPLEAHKSNTL
TFSLTALDCGFDNPIFAAIELEYAESDRDPTGQAAEQAQKHLTFYELDLGLNHVSRKASE
PIDNGANLLVTVPGGGDGPSGLLVCCDNFVLYRNQGHPEVRAVIPRRADLPAERGVLIVA
AATHRQKSLFFFLLQTEYGDIFKVDLEYSGDTVSELRIKYFDTIPVTSAICVLRSGFLFA
ASEFGNHALYQFRDIGRDVDVESSSATLMETEEGFQPVFFQPRALKNLFRIDEIESLMPI
MDMRVANLFDEETPQVFTACGRGPRSTLRILRPGLAISEMARSMLPAEPIAVWTVKKNIN
DMFDAYIVVSFANVTLVLSIGETIEEVSDSQFLDTTHSLAVSLLGEDSLMQVHPNGIRHI
REDGRVNEWRTPGKKTITKVGSNRLQVVIALSGGELIYFEMDMTGQLMEVEKQDMSGDVA
CLAIAPVPEGRQRSRFLAVGSYDNTIRILSLDPDDCLQPLSVQSVSSAPESLMFLEVQAS
VGGEDGADHPANLFLNAGLQNGVLFRTNVDMVTGQLSDTRSRFLGLRPPKLFPCIVSHRQ
AMLCLSSRPWLGYIHQGHFLLTPLSCDTLESAASFSSDQCSEGVVAVAGDALRIFTIERL
GETFNETAIPLRYTPRKFVILPKKKYLAVIESDKGALSAEEREAAKKECLEAAGVIENGN
ANNGDQMENGDGQDDGAEDRNTLPDEQYGYPKAESERWVSCIRILDPRSRDTTCLLELQD
NEAAVSICTVNFHDKEHGTLLAVGTAKGLQFWPKRNLAAGFIHIYKFVDEGRSLELLHKT
QVEEVPLALCQFQGRLLAGVGSVLRLYDLGKRKLLRKCENKLFPRTIVSIHTYRDRIYVG
DMQESFHYCKYRRDENQLYIFADDSVPRWLTAANHIDFDTMAGADKFGNIYFARLPQDVS
DEIEEDPTGGKIKWEQGKLNGAPNKVEEIVQFHVGDVVTCLQKASLIPGGGECLIYGTVM
GSVGALLAFTSREDVDFFSHLEMHLRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFP
SLPADMQRKIADELDRTPGEILKKLEDIRNKII
NT seq
3702 nt
NT seq
+upstream
nt +downstream
nt
atgtacctctacagcctcacgctgcagcgggcgacgggcgcggtctgcgccgtcatcggc
agcttcagcggccgcgactccaagaagtcgtcgggctccggctcctcctcctcctcctcc
acgcaggagatcgccgtcgccaggggcactacactcgagctcctccgccccgacccggag
accggccgtctccgcacgctcctctccgtcgacgtcttcggcgccatccgctcgctcgcc
cagttccgcctcacgggggccaccaaggactacctcgtcgtcggcaccgactccggccgc
ctcgtcatcctcgagtactcccccgaccgcaaccgcctcgacaaggtccaccaggagacc
ttcggcaagtccggctgccgccgcatcgtccccggccagctcctcgccgtcgaccccaag
ggccgcgccctctgcatcgccgccctcgagaagcagaagctcgtctacgtcctcaaccgt
gacgccgccgcgcgtctcaccatctcctccccactcgaggcgcacaagtccaacacgctc
accttctccctcactgccctcgactgtgggttcgacaatcctatcttcgctgccattgag
ctcgagtacgccgagtccgaccgcgatcccactgggcaggccgctgagcaggcgcagaag
cacctcacattctatgagctagacctgggcctcaatcatgtatctcgcaaggcctccgag
ccgatagacaatggtgctaatctactggtcaccgtgcctggtggcggcgacgggccaagt
ggcctcctcgtgtgctgtgacaattttgtgctctaccggaaccaggggcatccggaagtg
cgcgctgtcattccacgccgcgctgatctcccggctgagcgtggtgttctcattgttgca
gctgccacacacaggcagaagagcttgttcttcttcttattacagacagaatatggcgat
atcttcaaggttgatctcgaatacagcggtgacactgttagtgagctcaggattaagtac
tttgacaccataccggtgacatctgctatctgtgtgctgcgctcaggttttctctttgct
gcttcggagtttggcaaccatgcactttatcagtttcgtgatattggccgggacgtggat
gttgagtcatcttcagcgacactgatggagacagaggaggggttccagccagtgttcttt
cagccaagggcactcaagaacctgttccggattgatgagattgagagcctcatgccaatc
atggacatgcgtgttgcaaatcttttcgatgaggaaacaccccaggtattcacagcctgc
ggccgtggtcctcggtccaccttgcgcatcttgaggcctggccttgctattagtgagatg
gctcgatctatgttaccagctgagcctattgctgtctggactgtaaagaagaatatcaat
gacatgtttgatgcctacattgttgtgtcctttgccaatgttactctcgtgctctccatt
ggtgagactattgaggaagtcagcgacagccagtttctggacaccactcattccctagcg
gtttcgctccttggcgaggactcacttatgcaggtccatcccaacggcatcaggcacatc
agggaggatggccgtgtgaatgagtggaggacacctgggaagaaaactatcactaaggtt
ggatcaaaccggctccaggtggtaattgccctcagcggtggagagcttatctattttgag
atggacatgacaggtcagcttatggaagttgagaagcaggacatgtctggtgatgttgca
tgcctggctattgcaccagttccagaggggagacagaggtcccgtttccttgcagttggt
tcctatgataacaccatccggatactctccctggaccctgatgactgtttgcagcctctt
agtgtccaaagtgtctcttcagccccagaatcccttatgttcctagaagttcaagcatca
gttggtggtgaggacggtgcggaccatccagccaaccttttcctcaatgctggcctgcaa
aatggtgtcttgttccgcaccaatgttgacatggtcactggtcagctatcagacacacga
tctcggttccttggcctgagacctccaaagctgtttccctgcatagttagccatcggcaa
gcaatgctttgcctgtccagccgtccctggcttggctacatacatcaaggccacttcctc
ttgactccactatcctgtgatacacttgagtctgctgcatcattctcttctgatcaatgt
tcagaaggtgttgttgctgttgccggtgatgccctacggattttcaccattgaacgcctg
ggagaaactttcaatgaaacagccatccctctgcgctacaccccaaggaaatttgtgatt
ctcccaaaaaagaaataccttgctgtcattgagagtgacaagggtgcactcagtgcagaa
gagcgagaagctgctaagaaggagtgccttgaggctgctggtgtaatagaaaatggcaac
gcgaataatggggatcagatggagaatggcgatggtcaagatgatggtgctgaggacaga
aacacacttcctgatgaacagtatggttatcccaaggcggaatcagaaaggtgggtttct
tgcatcaggattcttgatccaaggagcagagacacgacttgtctgctggaattgcaggac
aatgaagcagctgttagtatttgcactgtgaactttcatgataaggagcatggtactctc
ttggctgttggtactgccaagggattgcagttctggcctaagaggaaccttgcagctggt
ttcatccatatatacaagtttgtggatgaagggagatcacttgaactgcttcacaagaca
caggtggaggaagtacctctcgctttgtgccagttccaaggacggttgcttgctggagtt
ggttcagtcctcagattatatgatcttgggaagagaaagttgctcaggaagtgtgaaaat
aagctttttccaaggacaatagtgtctattcatacttaccgagataggatttatgttggt
gatatgcaagagtcatttcattattgcaaatacagaagggatgaaaaccaactgtatatc
tttgctgatgacagtgttcccagatggcttacagcggcaaatcatatagattttgatact
atggcaggggcagataagtttgggaacatatattttgctcgccttcctcaggatgtctca
gatgagattgaagaggacccaactgggggaaagattaaatgggagcaagggaagttgaat
ggggctccaaacaaagtagaggagatcgttcagtttcatgttggtgatgttgtcacatgt
ttgcagaaagcctctttaataccaggaggcggtgaatgtcttatttatgggactgtgatg
ggcagtgttggggcattgcttgcattcacctccagggaagatgttgacttcttttctcac
ttggaaatgcatctccgccaggagcatccaccattatgtggaagagatcacatggcctac
agatctgcttattttccagttaaggatgtgattgatggtgatctctgcgagcagtttcca
tcccttccagctgatatgcagaggaagattgctgatgaactcgacaggactcctggtgaa
atcctgaagaaactggaagacatcaggaacaaaattatctaa
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