Oryza brachyantha (malo sina): 102700751
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Entry
102700751 CDS
T02995
Name
(RefSeq) eukaryotic initiation factor 4A-III homolog A
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
obr
Oryza brachyantha (malo sina)
Pathway
obr03013
Nucleocytoplasmic transport
obr03015
mRNA surveillance pathway
obr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
obr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102700751
09122 Translation
03013 Nucleocytoplasmic transport
102700751
03015 mRNA surveillance pathway
102700751
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
obr03019
]
102700751
03041 Spliceosome [BR:
obr03041
]
102700751
03009 Ribosome biogenesis [BR:
obr03009
]
102700751
03012 Translation factors [BR:
obr03012
]
102700751
Enzymes [BR:
obr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
102700751
Messenger RNA biogenesis [BR:
obr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
102700751
mRNA cycle factors
Stress granule specific factors
102700751
Spliceosome [BR:
obr03041
]
Complex C
Other components
EJC/TREX
102700751
Ribosome biogenesis [BR:
obr03009
]
Eukaryotic type
90S particles
Helicases
102700751
Translation factors [BR:
obr03012
]
Eukaryotic type
Initiation factors
eIF-4
102700751
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
AAA_30
AAA_22
AAA
TniB
Motif
Other DBs
NCBI-GeneID:
102700751
NCBI-ProteinID:
XP_006644417
UniProt:
J3L281
LinkDB
All DBs
Position
1:18998333..19002337
Genome browser
AA seq
404 aa
AA seq
DB search
MAAATTSRRGPGAMDDENLTFETSPGVEVISSFDQMGIRDDLLRGIYAYGFEKPSAIQQR
AVLPIISGRDVIAQAQSGTGKTSMISLSVCQIVDTAVREVQALILSPTRELAAQTERVML
AIGDFINIQVHACIGGKSIGEDIRKLEHGVHVVSGTPGRVCDMIKRRTLRTRAIKLLILD
EADEMLGRGFKDQIYDVYRYLPPELQVCLISATLPHEILEMTSKFMTDPVRILVKRDELT
LEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLMERMRSNNFTVSAM
HGDMPQKERDAIMAEFRSGATRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGR
SGRFGRKGVAINFVKKEDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggccaccacgtcccggcgcggccccggcgccatggacgacgagaacctcacc
ttcgagacctcccccggggtcgaggtcatcagcagcttcgaccagatggggatccgcgac
gacctcctccgcggcatctacgcctacggcttcgagaagccctccgccatccagcagcgc
gccgtcctccccatcatcagcggccgcgacgtcatcgcccaggcccagtccgggacgggc
aagacctccatgatctcgctctccgtctgccagatcgtggacaccgcagtccgtgaggtg
caggccttgatactctcaccaactagagaacttgctgcacaaacagaaagagttatgctg
gctattggtgattttatcaatattcaagtgcatgcttgtattggcggcaaaagcattggt
gaggatattagaaagcttgagcatggagtgcacgttgtgtctggaacacctggcagagta
tgtgatatgatcaagagaaggaccttgcgcacaagagccattaagctcctaattctggat
gaagctgatgaaatgttgggcagaggctttaaggaccagatatatgatgtctacagatat
ctgcccccagaactccaggtttgcttgatctctgcaactctgcctcatgagattttggag
atgacaagcaaattcatgactgacccagttcggatccttgtaaagcgtgatgaattgacc
ctagagggcatcaaacagttctttgttgctgttgagaaagaagaatggaagtttgataca
ctttgtgatctttatgatacattgacaatcacccaagctgttattttctgcaacacaaag
aggaaggtcgattggcttatggaaagaatgcggagcaataacttcacggtatcagctatg
catggtgatatgcctcaaaaggaaagggatgccattatggctgaattcaggtctggtgca
actcgtgttctaatcacgacagatgtgtgggctcgtggtctggatgttcagcaggtgtct
cttgtcataaactatgatctcccaaataatcgtgagctttacatccatcgcatcggtcgc
tctgggcgttttggtcgcaagggtgtggcaatcaattttgtcaaaaaggaagatatccgt
attctcagagatattgagcagtactacagcacgcagattgatgaaatgccaatgaatgtt
gctgatctaatttga
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