Oryza brachyantha (malo sina): 102700953
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Entry
102700953 CDS
T02995
Name
(RefSeq) LOW QUALITY PROTEIN: DExH-box ATP-dependent RNA helicase DExH6
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
obr
Oryza brachyantha (malo sina)
Pathway
obr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
obr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102700953
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
obr03019
]
102700953
03012 Translation factors [BR:
obr03012
]
102700953
Enzymes [BR:
obr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
102700953
Messenger RNA biogenesis [BR:
obr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
102700953
Translation factors [BR:
obr03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
102700953
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
HA2_C
Helicase_C
R3H
OB_NTP_bind
HA2_N
Ank_5
nSTAND3
Ank_2
ATPase
AAA_19
AAA_22
AAA_23
ResIII
AAA_16
AAA_7
ABC_tran
Rad17
AAA_25
Myosin_head
Motif
Other DBs
NCBI-GeneID:
102700953
NCBI-ProteinID:
XP_015690006
LinkDB
All DBs
Position
1:24720140..24732433
Genome browser
AA seq
1272 aa
AA seq
DB search
MAHMSGGPVRLNLPWPARPPARNARPPPSGPRFSWRAQQRRGSNEARGRRREDSRTGRAA
PDVVDAKPPALRDEAEEEEEEEGGRMGRKGRKGKDAADGAGAGAVREATLVRVSKVLEDF
QASDAQVYKFEPGISKQERAAIHEMCRKLGMISKSSGNGERRCLSVYKRKQNQSSEMEEG
PSLLGFSGEARNVLQDLFTHYPPVDAELNGHTVRKASDKATKIQWTPDGAFCRPALRKPD
ILKKVEMLASKVNKSDQLRKIVQDRSKLPISSYKDVISSTLENNQVVLISGETGCGKTTQ
VPQYILDHMWGKGESCKVVCTQPRRISAISVAERISAERGEAVGDTVGYKIRLESKGGKN
SSILFCTNGILLRVLIGRVTNISKEQSRKRSFGDAITELTHIIVDEIHERDRFSDFMLAI
LRDLLPLYPHLRLVLMSATIDAERFSKYFSGCPVIQVPGFTYPVKTFYLEDVLSILQSVG
DNHLNTTTDDLKQSSLLTDDYKSSMDEAINLALGSDEFDPLLELISTEQNQEIFNYQHSE
TGVTPLMVLAGKGQVGDVCMLLSFGVDCSAQDHDGKSALDWAEQGNQQEVCEVIKKHVEC
SSAKLTEENELLNKYLATINPEHIDTVLIERLLRKICVDSNEGAILVFLPGWEDINQTRE
RLLASSFFRDSSKFLVLSLHSMIPSLEQKKVFKRPPAGARKIILSTNIAETAVTIDDVVF
VIDSGRMKEKSYDPYNNVSTLHSSWVSKANARQRQGRAGRCQPGTCYHLYSRFRAASLPD
YQIPEIKRMPIEELCLQVKLLDSDCRIADFLKKTLDSPVPETVRNAISVLQDLGALTQDE
QLTELGEKLGTLPVHPSTSKMLLFGILMNCLDPALTLACAADYRDPFLLPMAPDERKKAA
AAKVELASLYGGYSDQLAVVAALDCWRRAKDRGEESQFCSKYFVSSNTMHMLSNMTKQLQ
NELAQRGFVPADASACSLNARDPGIIRAVLMAGAYPMVGRLLPPNRNIRRAVIETASGAK
VRLHPHSCNFNLSSRKTSGNPLVTYDEITRGDGGMYIKNSSVVGTYPLIILATEMVVAPP
DDDDSDDEDDTDKGTLGQQKEIMSSPDNSVSVVIDRWLRFDATALDVAQIYCLRERLASA
ILFKVKHPQDVLPPDLGATMYAIACILSYDGLPAMVTTDDAGTSRGSSSTESSRFAQGRR
VAYIPPGGFLMSLLSDKPLNAPHFQKSFNHRDGASGHIRPSRASIGRFDQSRRPQRNNSG
PRTFKRQRNGAQ
NT seq
3819 nt
NT seq
+upstream
nt +downstream
nt
atggcccacatgtcaggcgggcccgtccgtctaaacctgccatggcccgcccgcccgccc
gcccgcaacgcgcggccgccgccatctgggcctaggttttcctggagagcacagcagcgg
cgcggaagcaacgaagcgaggggccggcggcgcgaggacagccgaaccggccgcgccgca
ccggacgtcgtagacgccaagccacccgcgctccgggacgaggcggaggaggaggaggag
gaggagggaggaaggatggggaggaaaggacggaaggggaaggacgcggctgacggcgcc
ggcgccggcgccgtgcgggaggcgacgttggtgcgcgtctccaaggtgctcgaggacttc
caagcctccgacgcccaggtttacaaatttgaacctggcatatccaaacaagagcgagct
gcgatacatgagatgtgtagaaaattgggcatgatatccaagagttctgggaatggggaa
cggcgatgtctatctgtttacaaaagaaaacagaaccagtcttctgaaatggaagaagga
cctagccttcttggattttctggggaagcaagaaatgttttgcaagatttattcacgcat
tatccccctgttgatgctgagctaaatgggcataccgtcaggaaggctagtgataaggct
acaaagattcaatggacgccagatggtgcattttgtagaccagcattgcgcaaaccggat
atactgaagaaggtggagatgcttgcatcgaaagtaaataaatccgatcagttgagaaag
attgtccaagatagatctaagcttccgatttcatcgtacaaggatgtaatttcgtcaact
ttagagaacaaccaggtggttcttatttcaggagaaacaggatgtggtaaaacaacccag
gttcctcaatatatcttggatcatatgtggggcaagggtgaatcatgtaaggttgtatgc
actcaaccaaggcgaatatcagctatctcagttgctgagcggatctctgcggaaagagga
gaggctgtgggtgacaccgttgggtataagatacgcctggagtcaaaaggagggaagaac
tcatcaatcttgttctgtacaaatggcattcttttgagggtattgataggcagagtaact
aatatttcaaaagaacaaagtcggaaacgctcattcggtgatgcaattacagagttaaca
catattattgtggatgaaatccatgaaagggacaggttttcagatttcatgttggctatt
ctgagagatttgctgccattgtatcctcatttgcgcttggtactcatgagcgcaacaatt
gatgctgagcgattctcaaaatatttcagtggatgtccagttattcaagtccccgggttt
acctatcctgtcaaaactttctatctggaggatgtgctttctattttgcagtctgtaggt
gacaaccatcttaatactacaacagacgatctgaaacagagcagtttattaactgatgat
tacaaaagctcaatggatgaagcaattaacctagctttgggtagtgatgaatttgatcct
ctccttgagcttatttctactgagcagaaccaagaaatcttcaattaccagcactcagaa
accggtgtgacacctttgatggttcttgctggaaaaggtcaggttggagatgtttgcatg
cttctatcatttggggtggattgttctgcacaggatcatgatggaaaatctgcattagat
tgggcagaacaagggaatcaacaagaggtttgcgaagttattaagaaacatgtggagtgt
agttcagcaaagttaactgaagagaacgagctgctcaataaatatttggcaaccatcaat
cctgagcacatcgatactgtgctaatagaacgattgctcagaaaaatttgtgttgattct
aatgaaggagctatcctggtgtttcttcctgggtgggaagatataaatcaaacacgggaa
aggctacttgcttcttccttctttcgagattcgtcaaagtttcttgtgttgtcacttcat
tctatgatcccttcattggagcagaaaaaggtttttaagcgcccacctgcaggagctcgt
aaaataatcctctcaaccaacatagcagagactgctgtgacaattgatgacgttgtattc
gtcatagatagtgggagaatgaaagagaaaagttatgatccatataataatgtctcaaca
cttcattcttcctgggtttcaaaagctaatgcaagacaacgtcaagggcgtgctggtcgt
tgtcagccaggaacatgctaccatctttactctagatttcgagcagcttcattgccagat
taccaaatccctgaaataaagaggatgcctattgaggagctatgtttacaggtcaaactg
cttgattcggactgcagaattgcagactttttaaagaaaactttggactctccagttcca
gaaactgtaagaaatgctatttctgtacttcaggatcttggtgctttgactcaagatgaa
caattgacagagctaggggaaaagttgggtacccttccagtccatccatccacaagcaag
atgctgctgtttggtatattaatgaattgcctagatccggcgttgacattggcatgtgca
gcagattatagagatcctttcctccttccaatggctccagatgagaggaaaaaggctgcc
gcagccaaggttgaacttgcttcactgtatggtggctacagtgatcagcttgcagttgta
gcagctttggactgttggaggcgtgccaaagataggggcgaagaatctcagttttgttct
aagtattttgtgtcttcaaacaccatgcatatgctatcaaacatgacgaaacagcttcag
aatgaactagctcaaagaggatttgttcctgcagatgcttctgcttgcagcttaaatgct
agagatccaggtatcattcgtgctgtccttatggctggtgcttatccaatggtaggaaga
ttgcttccccctaacaggaatattagaagagcggtcattgaaacagcaagtggtgccaaa
gttcggctgcatccacattcttgcaattttaacttgtcttctcgtaagacttctgggaat
ccattagtaacatatgatgagattactcgaggcgatggtggaatgtacataaaaaattct
tctgttgttgggacctatcctttaataattcttgctacggaaatggttgttgctcctcct
gatgatgatgatagtgatgatgaggatgacactgacaaaggcactttgggacaacaaaag
gagataatgtcttctcctgataactctgtttcagttgttattgatcggtggctccggttt
gatgctacagctcttgatgttgctcaaatatactgccttagagagcgcctagcatcagct
attctattcaaagtcaaacatccacaggatgttctcccacctgatcttggagcaacaatg
tatgctattgcgtgcatcctatcgtatgatggcttgcctgctatggttacaactgatgat
gctggcacaagtaggggttcaagttcaactgaatcaagcagattcgctcagggtcgtcga
gtggcttatatacctcctggcggtttcctcatgtctttgttatcggacaaaccgcttaat
gctcctcattttcagaagtcctttaaccaccgagatggtgcttcagggcatattcggcca
tcaagggcctccatcggtagatttgatcagtcacggcgtccgcaacgtaataattctgga
ccaaggactttcaaaagacagcgcaacggtgcacagtga
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