Oryza brachyantha (malo sina): 102701129
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Entry
102701129 CDS
T02995
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
obr
Oryza brachyantha (malo sina)
Pathway
obr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
obr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102701129
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
obr03041
]
102701129
03009 Ribosome biogenesis [BR:
obr03009
]
102701129
Enzymes [BR:
obr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
102701129
Spliceosome [BR:
obr03041
]
Complex A
U1 snRNP components
U1 related factors
102701129
Complex B
102701129
Ribosome biogenesis [BR:
obr03009
]
Eukaryotic type
Pre-60S particles
Helicases
102701129
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
102701129
NCBI-ProteinID:
XP_040375959
LinkDB
All DBs
Position
1:complement(3900865..3905438)
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AA seq
493 aa
AA seq
DB search
MSRFDGRAADPGSYRDRRSEGAFGGGTRAFAPPSKADSAAAADLDGLPRFEKNFYVESPS
VAGMTEDEVEAYRRRREITVEGRDVPKPVREFRDVGFPEYVLQEISKAGFVEPTPIQSQG
WPMALRGRDLIGIAETGSGKTLAYLLPAIVHVNAQPILAPGDGPIVLVLAPTRELAVQIQ
QEATKFGASSKIKSTCVYGGVPKGPQVRDLQKGVEIVIATPGRLIDMIESHHTNLRRVTY
LVLDEADRMLDMGFEPQIKKIVSQIRPDRQTLYWSATWPKEVEQLARNFLFDPYKVIIGS
EELKANHAISQHVEILSESQKYNKLVNLLEDIMDGSRILIFMDTKKGCDQITRQLRMDGW
PALSIHGDKSQAERDWVLSEFKSGKSPIMTATDVAARGLDVKDVKYVINYDFPGSLEDYV
HRIGRTGRAGAKGTAYTFFTAANARFAKDLINILEEAGQKVSPELANMGRGAPPASSGSR
DRYRGYGSGRSWS
NT seq
1482 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcttcgacggccgcgccgcggaccccggctcgtaccgcgaccgccgcagcgag
ggggcgttcgggggcgggacgagggcgttcgccccaccgagcaaggcggactccgccgcc
gcggccgacctggatggcctgccgcggttcgagaagaacttctacgtggagtccccttcc
gtggccggcatgacggaggacgaggtggaggcgtaccgccgccgcagggagatcactgtg
gagggccgtgatgtgcccaagccagtgcgcgagttccgtgatgtcggattcccagaatat
gtgctgcaagaaatttcaaaagctggatttgtagaacctactcctatccagtctcaaggt
tggccaatggcattgaggggacgtgatcttattggcattgctgaaacaggatcagggaaa
acgcttgcttaccttttgcctgccatcgttcatgttaacgctcagcctattctagctcct
ggcgatggtccaattgttctggtgttagcccctacacgtgaacttgctgtgcagatacag
caagaggcaactaagtttggtgcatcatcaaaaataaaaagtacttgtgtatatggtggt
gttccaaaaggtcctcaagttcgtgatcttcaaaaaggtgttgaaattgttatagctaca
ccaggaagactgattgatatgatagaatcacaccatacaaatttgcggagggtcacttac
ctcgttttagatgaggcagaccggatgctagacatgggctttgaacctcagattaagaaa
atcgtttctcagattcgtccagatcgccaaacgctatattggagtgctacttggccaaag
gaagttgaacagctagcaaggaactttctttttgacccatacaaggttataatcggttct
gaggaattgaaagctaatcatgccatttctcagcatgtagagatattatctgagagtcag
aagtacaataagttggttaatctactggaggatataatggatggcagccgaatattaata
tttatggacacgaaaaagggatgtgatcaaatcactagacagcttcggatggatggttgg
cctgctctgtctatccatggtgacaagagccaagctgagagagattgggttctttccgaa
tttaaatcagggaaaagtcctatcatgacagctactgatgtggctgctcgaggcttagat
gttaaggatgttaaatatgtcattaactatgactttccgggatcactggaggattatgtt
catcgcattggtcgaactggtagagctggagcaaaaggaacagcttacacgtttttcact
gctgctaatgccagatttgccaaggatctgatcaacattctagaagaagctggacagaag
gtcagccctgaattagctaatatgggtcgtggtgccccacccgcttcttcaggttcccgt
gatagatatagagggtatggaagtggtcggtcatggagctga
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