Oryza brachyantha (malo sina): 102701631
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Entry
102701631 CDS
T02995
Name
(RefSeq) poly(A)-specific ribonuclease PARN
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
obr
Oryza brachyantha (malo sina)
Pathway
obr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
obr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102701631
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
obr03019
]
102701631
Enzymes [BR:
obr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
102701631
Messenger RNA biogenesis [BR:
obr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
102701631
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
DUF5415
Motif
Other DBs
NCBI-GeneID:
102701631
NCBI-ProteinID:
XP_006653504
LinkDB
All DBs
Position
4:complement(12354788..12359591)
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AA seq
721 aa
AA seq
DB search
MLIRRRRRFLRAPSIALLSRLLSSSPPPAAGGGEARGVAVKQVTRGNLADALEELRARVR
DAAFVGVDLEMSGVTSAPWRDTLELDRADVRYLKLRDSAERFAALQLGVCPFRWDPAKSA
FVAHPHNFFIFPHNKLLNDCSSHEFLCQTTSIDFLAKYQFDFNTCFREGIYYLSRTQEEK
ALQKLYALHNNETSAYPNTSEEEEDVPLKSAADILFTERMKIKFNEWHKSIVSNQRVDDH
RSGNFKFTDQFQTVFFKMRPAIMLNGFTSHQLKLIQQILKKHFKDLVYVCTFLEDGISEK
RVVYTDTNSDKILLIKDVRGDILKSREAIVKSAVGIRHVIDLLASERKLIVGHSCFLDIA
QIYSKFVGPLPSSMEDFALSINKIFPHIADTRHLMSVNEAVQYRMRHKSKSLSSAFSLLC
PTLHAPNENSSTLPPVKIEVEADETVLSCFTSGAKHEAGYDAFMTGCVFVQLCACLGIKF
EHLSPLENLATNINLKKHINLLAPCFNSGTVLDLSTGMERPDPGYKFRYPAAVYDNAVLI
WGFQSKVRPKDIKDCICKVFGRDSVTLVFPIDSTAVLVQFSKQESVNSFLDLKATLEGAD
TAISVLHPLSTILEGGKTRAAKYDTYRDICRSSVSMFSFADQAEAVCSNSNSGFKFKESS
AADGSRECESALDGTVPASVKQSGGTKSDSKNQGDNDISYQDILDALQDGKTLFGKRMRN
T
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atgctgatccgccgccgccgccgcttcctccgggcgccgtccatagccctgctctcccgc
ctgctctcctcctcgccgccgcccgccgcgggaggaggagaggccagaggggtggcggtg
aagcaggtgacgcgggggaacctggcggacgcgctggaggagctgcgggcgcgggtgcgg
gacgcggcgttcgtcggggtcgacctggagatgagcggcgtcacgagcgcgccgtggagg
gacaccctggagctcgaccgcgccgacgtccgctacctcaagctccgcgactccgcggag
cggttcgccgccctgcagctcggcgtctgccccttccgctgggacccagccaagtccgct
ttcgtcgcccacccgcataacttctttatctttcctcacaataagctcctgaatgattgt
tcatcacatgaatttctgtgtcagaccacgtcaattgacttccttgcaaagtaccagttt
gatttcaacacatgcttccgtgaaggaatatattatttatccagaacacaagaagaaaag
gcacttcagaaattatatgcattgcataataatgagacatctgcatatccaaacacttct
gaagaggaagaagatgtgccattaaagagtgctgcagatattcttttcacagaaagaatg
aagatcaaattcaatgagtggcacaagtcaatagtcagcaatcaaagagttgatgaccat
aggtcaggaaacttcaaatttacagaccaattccagacggttttcttcaaaatgcgtcct
gctatcatgcttaatggattcacatcacatcagttaaagttaattcaacagattttaaaa
aagcattttaaagatcttgtgtatgtctgtacatttttggaggatgggatatcagaaaag
agggtagtttatacagacaccaatagtgacaagatattgctgataaaagatgttcgggga
gatatactaaaaagcagggaagcaatagttaaatcggcagtagggatccgtcatgtcatt
gatcttcttgcctcagaaaggaaattgattgtcggtcatagttgtttcctagatattgca
cagatctacagcaaatttgttggtcctcttccttcatccatggaggattttgccttgagt
atcaacaaaattttcccacatattgcagacaccaggcatcttatgtctgttaatgaagca
gttcaatatcgtatgaggcataaaagcaaatcactttcttcagcattttcattgttgtgc
cctacacttcatgcacccaatgagaattcatccacccttcctcctgtgaaaattgaagtt
gaggcagatgaaacagtgttatcttgcttcacttcaggggccaagcacgaagcaggttat
gatgcattcatgactggatgtgtttttgtgcagctgtgtgcttgtcttggcatcaaattt
gagcacctctcacctctggagaacctagcaacaaacattaatctcaagaaacacatcaat
cttctggccccatgctttaacagcggcacagtgcttgatttgagtactggcatggagaga
ccagatccaggttataagtttagatatcctgctgctgtgtatgacaatgctgttctcatc
tggggattccagtcaaaggtgagaccaaaggatataaaggactgcatctgcaaagtgttt
ggtcgagattcggttacattagtcttccctattgattccactgcagtccttgttcaattc
agcaaacaagagtctgtaaacagcttcttggatctgaaggctaccttagagggcgcagat
accgcaatttcagttttgcaccctttgtcaactatattggaaggaggcaaaacacgagct
gcaaaatacgatacctatagagatatttgccgctcctctgtatcgatgttctccttcgcg
gatcaagctgaagcagtttgttcaaattcaaacagtgggttcaaatttaaggagtccagc
gctgctgatggatccagagaatgcgagagtgctcttgatggaactgtgcctgcctcggta
aaacagtcaggaggaacgaagtctgactccaagaatcaaggcgacaatgatatttcatac
caagatatcttagatgcgctacaagatggcaaaacattgtttggcaaacgaatgagaaac
acatga
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