Oryza brachyantha (malo sina): 102701841 Help Entry 102701841         CDS       T02995                                  Name (RefSeq) symplekin   KO K06100   symplekin Organism obr  Oryza brachyantha (malo sina) Pathway obr03015   mRNA surveillance pathway Brite KEGG Orthology (KO) [BR:obr00001]  09120 Genetic Information Processing   09122 Translation    03015 mRNA surveillance pathway     102701841  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03021 Transcription machinery [BR:obr03021]     102701841    03019 Messenger RNA biogenesis [BR:obr03019]     102701841 Transcription machinery [BR:obr03021]  Eukaryotic type   RNA polymerase II system    Other transcription-related factors     Transcription termination factor      102701841 Messenger RNA biogenesis [BR:obr03019]  Eukaryotic type   mRNA processing factors    3' end processing     Cleavage stimulation factor (CSTF) complex      102701841     U7-dependent histone pre-mRNA processing factors      102701841 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  Symplekin_C SYMPK_PTA1_N HEAT_EZ HEAT_2 HEAT VirE2 Motif Other DBs NCBI-GeneID:  102701841 NCBI-ProteinID:  XP_006658175 UniProt:  J3MPF5 LinkDB All DBs Position 7:19334810..19348034 Genome browser AA seq 1243 aa AA seqDB search MAVAAARDLPPTFLPHPSASSIEPRLRQLRRLPLLDFIARITDLHADEASPVRKLVAEMI GEVGSRRMAYLPNVMPCLLDLLNDETPAVARQAIKTGTSLFAKVLQQLVIQGLFSSGGID DSLKLCWDALLKLKSAVSHMAFQPMGNEGARLLAIKFVEKTVLLYTPDPDSPADPPNEVT EDMGFNVAWLRGGHALLNVGDLAMEASQSLGLLLEQLKPPKVKSLSTSMIIVFVTSLSAI AQRRPSFYGRILPVLLSLDPASSIIKVQVPGAFHALKSAFAACLKCTHSSAEPWRARLLE AQNIISQADSIEHSSNRVESLPLMETASTDNSNKRNLIDNMNDALEDGGHSNKRIRQSHD DQEHTENVKNNAEPSFVDVSSNPSTSASTGNSEAVYQLVSMFAALAAQGDRAAGSLQILS SSIAADLLAEVVMVNMQHLPVSHPEIDQQQTLSTSQPFGAPSSSLLSACFPLLESLLKRI NQNDREVDEVPAIDSSVVPSAADKIAAIPAIPGPTSGNPPMEENSNSSSIPFEVETAEAK VSTVDSSRLSAEIQESSEASHASTEPQGTQEHGGSFISSLPADISSAGLSLAQSSEIRSP SSSMVEASQALFSYSSTVTSQHVLPKLVVTNIDLSDEAKDLLQKEAFLRILGSDKQDASG GSIARLPLLAHLGVEFPLELDPWELLQKHVLSDYVNNEGHELTLCILNRLYHEAEQDQDF LSSRTATSVYESFLLTVAENLRDMFPASDKSLGKLLCEIPYLSEGVLKLLEGLCSPGSND KQDKDLQSGDRVTQGLSAVWNLIMLRPSNRDRCLEIALQSSIHHLDEVRMKAIRLVANKL FPMSSISKRIEDFANEKLNSVLEVVPADESAASEMSTPEAPKDGGLEHLSSSVADAQTLM SLYFALCTKKHSLLRHIFAIYGSLPQAAKQAVHRQVPILIRTIGSSPNLLGIISDPPADS RDLLMQVLQTLTDGAVPSQDLISSVKNLYSKTKDIEFLFSVLAHLPKDEILPVFPSIVNL PLDKFQVALSRILQGSPQNGPSLDPSEILIAIHVIDPEKEGIPLKKVIDACAACFEQRTI FTQQVLAKALNQLVEQIPLPLLFMRTVMQAIGAFPALVDFVMDIMSRLVSKQIWKYPKLW VGFLKCTILTKPQSYGVLLQLPAPQLESALSKNPVLKAPLVEHANQPNVRSTLPRSTLVV LGLAEDQQQPAPQAKSRQNQAGETSSSAADATTEVTQESSAAS NT seq 3732 nt NT seq  +upstreamnt  +downstreamnt atggcggtggccgctgcccgagacctcccgccgaccttccttccccacccgtcggcttct tccatcgagccgcgcctccgccagctccgcaggcttccactcctcgacttcatcgcccgc atcactgacctccatgccgacgaggccagccccgtgcgcaagctcgtcgccgagatgatc ggtgaggttgggtcaagacgcatggcgtaccttcctaatgtcatgccttgtctacttgat cttctgaatgatgagacacctgcagttgcaaggcaagctattaaaacaggaacaagctta ttcgccaaagtactgcaacagctagttatccagggcttgttctcaagtggtggcatcgat gattcactaaaattgtgctgggatgcactgctcaagcttaaatctgctgtgtcacatatg gcgtttcagccgatgggcaatgaaggagccaggttactggctattaagtttgtcgagaaa acagttctattgtacacccctgatcctgatagcccagcagatccaccaaatgaagttaca gaagatatgggattcaatgtagcatggttgcgaggaggtcacgctttgcttaatgttgga gatctggcaatggaagctagccagagccttggattgctgctagaacagcttaagccgcct aaagtaaaatcactcagtacttccatgatcattgtctttgttactagcctctcagctatc gcacaaagaagaccttccttttacggacgcatactgccggttttactttctttggatcca gcaagttccattattaaagtgcaagttccaggtgctttccatgctttgaagagtgccttt gctgcatgcctgaaatgtacacattcaagtgcagagccgtggcgagctcgcctattggaa gctcaaaatattatcagccaggcagattcgatagaacattcttcaaacagggtagaatcg ttgcctctgatggagacagcaagcactgacaatagtaacaagcgcaatctgattgacaac atgaatgatgcgctagaagatggtggccattccaacaaaagaatcaggcaatcacacgat gatcaagaacatactgaaaatgttaagaataatgctgagccatcctttgttgatgtctca tctaatccgtccacctctgcaagtactggcaattctgaagctgtatatcagttagttagt atgtttgctgcattagccgctcaaggtgacagagcagctggatcactgcaaatcctgtca tccagcattgctgcggacttattagcagaggtggtaatggttaacatgcagcacctgcca gtttctcatcctgaaatagaccaacagcaaactctttcaaccagccaaccatttggtgct ccgagttcaagccttctttcagcttgctttcctctgctggagtctttattaaagagaata aatcaaaatgatcgagaagttgatgaagtaccagctatagattcctctgtggtgccatct gctgctgacaaaatcgcagcaattcctgccattcctggacctacctcaggaaatccacct atggaggagaatagcaatagttcatcaattccatttgaagtggaaactgcagaggctaaa gtatccactgtagattcctctaggttatcagctgagattcaagaatcatcagaagcatcc catgcatcaacagaacctcaaggaacccaagagcatggtggcagttttatcagttcattg cctgctgatatttcctctgctggtctcagtttggctcaatcttcagaaattcgtagtcca agctcttctatggtggaagcaagtcaggccctgttctcatattcgagcacggttacttca cagcatgtgcttccaaagttggtcgtgactaatattgatctcagtgacgaggctaaagat ctgcttcaaaaagaagcgtttctgcggattcttggtagtgacaaacaagatgcatctggt ggttcaatagctcgtcttcccttgcttgctcacttgggtgttgagttccctttggagttg gacccttgggagcttctccagaagcatgtgctatctgattacgtaaataatgagggacac gagctgacactgtgcattctgaacaggttgtatcatgaagcagaacaggatcaagacttc ctttcatcaagaactgcaacatcagtttatgaatcgtttcttctgactgttgctgaaaat cttcgtgatatgtttccagcttcagataaatcacttggcaaattactttgtgagatacca tacttatcagagggtgtattaaagttactagagggcttatgttctcctggaagtaatgat aagcaggacaaggatctgcagagtggtgatagggttactcaaggacttagtgctgtctgg aaccttatcatgttaagaccttcaaatcgagacagatgtctagagattgctttgcagagt tcaatccatcatctagatgaggttcgcatgaaggcaatacgtttggtagcaaataagcta tttccaatgtcaagcatttcaaaaaggattgaggattttgcaaatgaaaaacttaattca gttctggaagtagttccagctgatgaatctgcagcttctgaaatgtctactcctgaagca cccaaggatggtggtttagaacatttatcatcttcagtagcagatgctcaaactctgatg tcactctattttgcattgtgcaccaagaagcattctcttcttcggcatatatttgcaata tatggaagtctaccacaagctgccaagcaggcagttcatcgacaagtacccattctgatc cgcacaataggctcatctcccaatcttcttgggattatctcagatccaccagcagatagt cgggacctactcatgcaggttttacagacactcactgatggagcagtgccatctcaagat ctgatctcctctgtaaagaacttatattctaaaacgaaggatatcgagttccttttttca gtcttggcccatcttccaaaagatgagatccttcctgtttttcccagtattgttaatctt cccttggataagtttcaagttgccctttctcgaatcctgcagggatcaccacagaatggc ccttctcttgacccatcagaaattctgattgcaatccatgtaatagatcctgagaaagaa ggaataccactcaagaaggttattgatgcctgcgctgcttgctttgagcaaaggacaata tttactcaacaagttttggcgaaagcgctgaaccaattggttgaacagattccgcttccg ttgctgtttatgcgaactgttatgcaagcgattggtgcatttcctgcattggtggatttt gtgatggatatcatgtcacgccttgttagcaagcagatatggaaatatcctaagttatgg gtaggattcctgaagtgcactatcttgacaaaacctcagtcatatggtgtgctgctgcag ttaccggctcctcagcttgaaagtgccttgagtaagaatcctgtactgaaggcacctttg gttgagcacgccaaccagcctaacgtacgatcaactcttcctaggtctactttggtagtt ctgggtcttgctgaagatcaacagcaacctgcgcctcaagcaaaaagtagacaaaatcag gctggagaaaccagcagttcagctgcagatgctacgacagaagtgacccaggaatcttcc gccgctagctaa

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