Oryza brachyantha (malo sina): 102701847
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Entry
102701847 CDS
T02995
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH1-like
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
obr
Oryza brachyantha (malo sina)
Pathway
obr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
obr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102701847
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
obr03041
]
102701847
Enzymes [BR:
obr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
102701847
Spliceosome [BR:
obr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
102701847
Complex C
U4/U6.U5 tri-SnRNP related factors
102701847
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
PWI
AAA_30
nSTAND3
SRP54
AAA_16
TsaE
Flavi_DEAD
ABC_tran
Motif
Other DBs
NCBI-GeneID:
102701847
NCBI-ProteinID:
XP_006659312
UniProt:
J3MS81
LinkDB
All DBs
Position
8:8889921..8901665
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AA seq
1052 aa
AA seq
DB search
MASDGQLRDWVSDKLMSLLGYSKSVVVQYVIRLAKECSSTGDLVGKLVEFGFSSSAETRS
FAADIYGKVPRKASGISNYQKQEREAAKLVKKQSTYKLLADEEDNDAETLTSTSRKSSAN
TSSKSRKHFRRKAEDQDDGNDDDANDTTTQDAGRNVRRRTEEVDDEDGDNDTDEEQERIR
DQQERAQLEKNMRERDAANTRKLMERQLSKEEQEEITRRSQAMDNNDTSDLRKFSRQAYL
QKRRDKKIDEIRDEILDHEYIFQDVKLTEAEEKEFRYKKKIYDLVKEHVESADDVAEYKM
PEAYDMGDSVNQEKRFSVAMQRYKDPEARDKMNPFAEQEAWEEHQIGKSKLQFGSKDRKR
SSDDYQYVFEDGIDFVKSSVIEGTQHEEDTDQEDADEKAMLKRELQDERKTLPIYKFRDE
LLKAVEEYQVIVIVGETGSGKTTQIPQYLHEAGYTAKGKVACTQPRRVAAMSVAARVSQE
MGVKLGHEVGYSIRFEDCTSEKTLIKYMTDGMLLREFLGEPDLASYSVVMVDEAHERTLS
TDILFGLVKDISRFRPDLKLLISSATLDAEKFSDYFDSAPIFKIPGRRYPVEVHYTKAPE
ADYIDAAIVTVLQIHVTQSPGDILVFLTGQEEIETIDEILKHRTRGLGTKIAELIICPIY
ANLPTELQAKIFEPTPEGARKVVLATNIAETSLTIDGIKYVVDPGFCKIKSYNPRTGMES
LLINPISKASANQRAGRSGRTGPGKCFRLYTSYNYMHDLEDNTVPEIQRTNLANVVLTLK
SLGIHDLVNFDFMDPPPSEALLKALEQLFALSALNSRGELTKTGRRMAEFPLDPMLSKMI
VASEKYKCSDEVISIASMLSVGNSIFYRPKDKQVHADNARLNFHTGNVGDHIALLNVYNS
WKETDYSTQWCYENYIQVRSMKRARDIRDQLEGLLERVEIEVSSNASDLDAIKKAITSGF
FHHSARLQKNGSYRTVKNPQTVFIHPSSGLAQVLPRWVIYHELVLTTKEYMRQVTELKPD
WLVEIAPHYYQLKDVDDSGTKKLPKGQGRAAL
NT seq
3159 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcgacgggcagctcagggactgggtctccgacaagctcatgtccctcctcggc
tactccaagagcgtcgtcgtgcagtacgtcatcaggctggcgaaggagtgctcttccacc
ggcgacctcgtggggaagctcgtcgaatttgggttctcctcttccgcggagacccggagt
ttcgccgcggacatctacggcaaggttccccggaaggccagcggtatcagcaattaccag
aaacaggaaagagaggcagcaaagcttgtgaagaaacagagcacttacaaactgttggcc
gatgaggaggacaacgatgctgaaaccctcacatcaacgagccgaaagagctccgcgaat
acttcctctaagagtagaaaacattttaggaggaaagcggaagaccaggatgatgggaat
gatgatgatgcaaatgatacaacaacacaggatgcggggaggaatgtgagaagacgaaca
gaagaggtggatgatgaagatggtgataatgacactgatgaagagcaagaaaggataaga
gatcagcaggaaagggctcagctcgaaaagaacatgagagaaagagatgcagccaacact
cgaaagttaatggagcgacaattatctaaggaggaacaagaggagatcaccaggagatct
caggcaatggacaacaatgacacttcagatttgagaaaattttcaaggcaagcttactta
cagaagagaagggacaaaaaaattgatgaaatcagggatgaaattctagatcacgagtac
atttttcaggatgtcaaactaactgaggccgaagaaaaagagttcagatacaaaaagaag
atttatgatcttgtcaaggagcatgttgagagtgcagatgatgttgctgagtacaaaatg
cctgaagcttatgatatgggtgatagtgtcaatcaagaaaagagattctctgtagcaatg
cagcgttacaaagatcctgaggcccgggataaaatgaatccttttgctgaacaggaagca
tgggaagagcaccaaataggaaagtctaaactgcaatttggatcaaaagataggaagcgg
tcttctgatgattatcagtatgtattcgaagatggcattgattttgttaaatcatcagtc
atagaaggaacacagcatgaagaagacacagaccaagaggatgctgatgaaaaagctatg
ttaaaaagggagctccaggatgagcggaaaactcttccaatctataaattcagggatgaa
ctgctcaaggctgttgaagagtatcaggttattgtcatagtgggagaaactggctctggc
aaaacaacacaaatacctcagtatcttcatgaagctggatatacagcaaaaggaaaggtt
gcatgcacacagcctcgtcgagttgcagcaatgagtgttgcagcgagggtgtcccaagag
atgggtgttaaactgggacatgaggttggctactctataaggtttgaggattgcacgtcg
gagaaaacattgattaagtatatgactgatggcatgcttctgagggagtttcttggtgaa
ccagatttggcaagctatagtgttgttatggttgatgaggctcatgagcgtacactgtct
actgatatcttatttggtttggtgaaggatatttcacggtttcggccagatctaaagttg
ctcatttcaagtgcaacccttgacgcagaaaaatttagtgactattttgattcagctcct
attttcaagatacctgggagacgataccctgttgaagttcattatacaaaagctccagaa
gcagattatatagatgcagccattgtcactgttttgcagatacatgtgacacaatcccct
ggtgatatccttgtcttccttacaggacaagaagaaattgaaacaattgatgaaatcctt
aaacatagaacaagaggcttaggcacaaagattgcagaactaattatctgtcctatatat
gcaaatcttcctactgagcttcaagctaagatatttgagcccaccccagagggtgctcgg
aaggttgttctggccactaatatagcagagacttcattgaccattgatggtataaagtat
gtcgttgatccaggcttttgtaagattaagtcatacaacccccgaacaggaatggaatct
ctacttatcaaccctatctcaaaggcatcagcaaaccagagggcaggaagatctggacga
actggaccaggaaaatgcttccgcctgtacacaagttataactatatgcatgaccttgag
gacaatactgttccagaaattcaaagaaccaaccttgcaaatgttgttcttactcttaag
agtcttggtattcatgacttggttaattttgattttatggacccacctccatcagaggct
ctattaaaggccctggaacaactttttgctctcagtgcactcaacagtcgtggagaattg
accaaaactggaagaagaatggcagagtttccattggatcctatgctgtcaaagatgatc
gtagcttcggagaaatacaagtgctctgatgaggtcatctccattgcatccatgttgtca
gttggcaattctatattctatcgtccaaaggacaaacaagtccatgcagacaatgcaagg
ttgaacttccacacaggcaatgttggggatcatatagcgctactcaatgtttacaactca
tggaaagaaacagactattcaacacagtggtgctatgaaaactatatacaggtccgcagc
atgaaaagggcaagagatattcgtgatcaactggaaggacttctagaaagagttgagatt
gaggtttcatcaaatgctagtgacttggatgctattaaaaaggctataacatcaggtttc
ttccatcattctgcacggttgcagaagaatggttcatatagaactgtgaagaatcctcaa
actgtatttatccatcctagttctggattagcacaggtacttcctcggtgggtaatatac
catgaattagtccttacaacaaaagagtatatgcgtcaggtaacagaattgaagcccgac
tggctggtagaaatagcaccacactattatcaactaaaagacgttgatgactctgggacc
aagaagctgcccaagggccaaggacgagctgcattatag
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