KEGG   Oryza brachyantha (malo sina): 102701905
Entry
102701905         CDS       T02995                                 
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
obr  Oryza brachyantha (malo sina)
Pathway
obr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:obr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    102701905
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:obr03041]
    102701905
Spliceosome [BR:obr03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    102701905
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40_Prp19 WD40 Beta-prop_WDR3_1st Beta-prop_THOC3 WD40_WDHD1_1st Beta-prop_WDR3_2nd WD40_CDC20-Fz Beta-prop_EML_2 WD40_Gbeta EIF3I Beta-prop_WDR36-Utp21_2nd Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_2nd WDR55 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd WD40_MABP1-WDR62_1st Beta-prop_WDR36-Utp21_1st Beta-prop_EML NBCH_WD40 Beta-prop_WDR75_1st Beta-prop_TEP1_C ANAPC4_WD40 Beta-prop_Aladin Beta-prop_DCAF4 PRP4 WDR90_beta-prop_4th Beta-prop_IFT122_1st Beta-prop_EIPR1 Beta-prop_RIG_2nd Beta-prop_WDR19_1st Beta-prop_WDR41 Beta-prop_Vps41 Beta-prop_SCAP WD_LRWD1 Beta-prop_IFT140_1st Beta-prop_WDR75_2nd Beta-prop_Nup120_160 Beta-prop_NWD2_C Peripla_BP_6 WD40_like Beta-prop_NUP159_NUP214 Beta-prop_ACSF4 DUF7899
Other DBs
NCBI-GeneID: 102701905
NCBI-ProteinID: XP_015690388
UniProt: J3LNU4
LinkDB
Position
3:11615847..11620273
AA seq 515 aa
MENPRPQAPAGTPPMAPLPVPPPIAPIPAPPTRAPAAAVASTSAAGGVGGGEAEYEVVSD
DHRAARERHERAVQELLQRRRAFAMAVPTNDSAVQARLRRLGEPVTLFGEREMERRDRLR
ALMVRLEAEGHLDRLLRAQEEEQGSAGAEEEEQIQYPFFTEGTQELLKARVDIAQYSLPR
AKARIERAKRRHDDPDEDPEAEANLVVKQAEDFVLECSEIGDDRPLTGCSFSRDASMLAT
SSWSGMIKVWSMPQVTKIATLKGHTERATDVTFSPVDGCLATASADKTAKLWKTDGSLLM
SFDGHLDRLARLAFHPSGKYLGTASFDKTWRLWDVITGKELLLQEGHSRSVYGVSFHPDG
SLAASCGLDSNARVWDLRSGRLWGNLMGHVKPVLGVSFSPNGYLVATGSEDNFCRIWDLR
NKRMLYSIPAHKSLISHVKFEPQEGYYLATSSYDTKVALWSARDYKPIKSLVGHESKVTS
LDISGDGQQIVTVSHDRTIKIWSCKSRAQDEMELD
NT seq 1548 nt   +upstreamnt  +downstreamnt
atggagaaccccaggccacaggcccctgcggggaccccgcccatggctcccctccccgtg
cccccgcccatcgcccccatcccggccccgcctacgcgggcccccgcggccgccgtcgcc
tctacctccgcggcgggaggagtgggcggcggcgaggccgagtacgaggtggtctccgac
gaccaccgcgccgcgcgggagcgccacgagcgcgcggtgcaggagctgctccagcgccgc
cgcgccttcgccatggccgtccccaccaatgactccgccgtgcaggcgcgcctccgccgc
ctcggcgagccggtcacgctcttcggtgagcgcgagatggagcgccgggaccgcctccgc
gccctcatggtccgcctcgaggccgagggccatctcgaccgcctcctccgcgcgcaggaa
gaggagcagggttccgcgggtgctgaggaggaggagcagatccagtaccccttcttcacc
gaaggcacgcaggagctgctcaaggcgcgcgtggacattgctcaatactcgctgccccgc
gccaaggccaggatcgagcgggccaagcgccgccatgacgatcccgacgaggaccctgag
gcggaggccaaccttgtcgtgaagcaagcggaggatttcgtgcttgagtgcagcgagatt
ggagatgaccgtcccctcaccggttgctccttctctcgagatgcgtcaatgctcgctact
agttcatggagtgggatgatcaaagtgtggagtatgccacaagtaactaaaattgcaact
ctgaagggtcatacagaacgtgcaactgatgttaccttttcaccagttgacggctgctta
gcaacagcttcagctgataaaactgctaaactgtggaagacagatgggtcactcttaatg
tcctttgatggtcacctggatcgtcttgctcgccttgcttttcatccatctggaaagtac
cttggtacagctagctttgacaagacctggagattgtgggatgttatcacaggaaaggaa
cttctactgcaagaagggcacagcagaagtgtgtatggagttagctttcacccagatggt
tctttagctgcatcttgtggccttgattcgaatgctcgagtttgggatctaaggtcagga
agattgtggggcaatcttatgggacatgtgaagcctgtcttaggcgtgagcttctcccct
aatggctatctcgttgcaactggaagtgaagacaatttctgtcgaatatgggacttgagg
aataaaagaatgttatattctataccggcacataagagtcttatctcacatgtcaagttt
gaaccccaagagggttattatttagcaacttcgtcctatgacaccaaagtagcgctgtgg
tcagctcgggattacaaaccgatcaaaagtttggtgggtcatgagtcgaaggttactagt
ttggatattagtggagatggacagcagattgtgactgtgtcacatgatagaacgatcaag
atttggtcctgcaaaagcagggcacaggatgagatggagctggactaa

DBGET integrated database retrieval system