Oryza brachyantha (malo sina): 102702254
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Entry
102702254 CDS
T02995
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
obr
Oryza brachyantha (malo sina)
Pathway
obr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
obr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102702254
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
obr03019
]
102702254
Messenger RNA biogenesis [BR:
obr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
102702254
mRNA degradation factors
5'-3' decay
Decapping complex
102702254
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
WD40_Prp19
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
WDR55
Beta-prop_WDR75_1st
Beta-prop_EML_2
Beta-prop_Vps41
Beta-prop_TEP1_C
Beta-prop_IFT140_1st
Motif
Other DBs
NCBI-GeneID:
102702254
NCBI-ProteinID:
XP_006647816
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All DBs
Position
2:complement(22674496..22683042)
Genome browser
AA seq
1332 aa
AA seq
DB search
MATPTGNPNPSPNPSTPFELSMLLKPMPNPAAPAAAPIFPGTAAAGPPPPSSTYSYPPAT
PPFHRPPFLHYPQDPLTPMPRPVISFPMPSPSPGANPNAAPGPNHGARLMQLLGNSGPAH
LESAVSMPPPTSEFAAAQPPPIPAMPSAPPARMLSSTSSKMPRGRLLGGGDRAVHDVDSR
LPGEAQPPQLEVTPITKYTSDPGLVLGRQIAVNRTYIVYGLKLGNIRVLNINTALRSLLR
GHTQRVTDMAFFAEDVHRLASASVDGRIYVWKIDEGPDEDNKPQITGKVEIAIQIVGDAE
SYHPRICWHSHKQEILFVGIGNCVLRIDTTRVRRGRDVSSEEPIKCHLDKLIDGVRLVGK
HDDDVTDLSLSQWMTTRLASGSKDGTVKIWDDRKPVPLSILKPHDGQAVYSVAFLTAPEH
PDHINLVTAGPLNREVKIWASANEGGVLLPSDSETWNCTQTLELVSSLEPRVEEAFFNQV
TVLPHASIILLANAKKNAIYAVHVEYGMDPASTCLDYIADFTVTMPILSLTGTHESQPGN
EQVVQVYCVQTMAIQQYGLDLSLCSPPTSDTAGLGRDPSISRVYETPLEVVGPESTVLTS
FSESYSVSSPSKPSTVDQQPTELDPKPSAPPLTYSEGDGSAHLPSASLASNMDPSGSGSS
LGNREMDQAAFDYAMNKNSEPDILKRQDTPMPKDNFVKDDPRDGRSDVTMLPNPHLMFKV
GGNTTHLVTPSEIISGALSSAESSHVPKSDGGKIQDATNSGPQMAELEPKHTNDQKVDQN
LDLEVAQLVYENTDQVRSSSEQAVKMISERLVTTDKYSVEDSQTCDRSMSEHTGTADESV
TKKPVEISEKIDYSSASMDQSSSYTKEKEPIMHTQASGQSSPSTSAFNSTEYSHEPANSA
YPPIDSFPEVATQGMLQQLIAMHKDLQKQLGTIVTAPLAKEGKRIEASLGRTMEKSIKAN
LDVLWIRIQEENAKREKAERERMQQMMTLIGSSISKDLPATLEKSLKKEISSVGPVVARA
ITPIIEKCSASAVADSIQKVVGERVANQLDKSVSAKLEATVARQIQMQFHTSIKQVLQDS
LRTSLESFLVPAFEQSCKTMFEQVDSAFQKGMSEHTIAIQQQVEAAHTPLAQTLKDTISS
ASSITQNLTAELLDGHRKLLALLASGNAKAHNTNVLQPNNVPVTRPPEVEAPLDPMKELG
RLISERKFDEAFTMALQRSDVSIVSWLCSQVDLRALCSMAPVPLNQGVLLALLQQLAVDI
ATETPRKIQWMTDVAMAINPTDPMIAMHVKPIFEQVYNTLVHLRSLPTTSPADSTNIRLF
MHVVNSVLLSYK
NT seq
3999 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccccgaccggaaaccctaatcctagccccaaccctagcactccattcgagctc
agcatgctgctgaagccgatgcccaaccccgccgcgcccgcagccgcccccatcttcccc
ggcaccgccgcggcggggccgcctccgccctccagcacgtactcctacccgccggccact
ccccccttccaccgccccccgttcctccactacccgcaggaccccctgacgcctatgccc
cgcccggtcatctccttcccgatgccgagcccgagcccaggcgcgaaccccaacgccgcc
ccggggcccaaccacggggcgcgcctcatgcagctcctcgggaactccgggccggcccac
ctcgagtccgccgtctccatgcccccgccgacgtcggagttcgccgccgcgcagccgccg
ccgatcccggcgatgccgtcagcgccgccggcgaggatgctgagcagcaccagcagcaag
atgccgcggggccggcttctcggaggcggtgacagagctgtgcacgacgttgactcgagg
ctgccaggggaggcgcaaccgccgcagctggaggtgacgccgatcaccaagtacacatcg
gatcctgggctcgtgctgggcaggcaaatcgctgtgaataggacgtacatcgtctacggg
ctgaagctcgggaacatccgtgtgctaaacatcaacactgcgctccgttcactccttcgt
ggccacacgcagagggtgacagatatggctttctttgctgaggatgttcatcgtttagca
agtgcaagtgtagatggtcggatatatgtgtggaagattgacgaaggtcctgatgaggac
aataaaccacaaattacaggaaaggttgaaattgccatccagattgtaggtgatgctgaa
tcttaccatccacggatctgttggcactctcataagcaggaaattctttttgttggcatt
ggaaactgtgtcttaagaatagacacaactagagtccgacggggaagggacgtaagttca
gaggaacctattaagtgtcatcttgacaagctgatcgatggtgtgcgattagttggtaag
catgacgatgacgtgacagatttgtccttatctcaatggatgactactcgactggcttca
ggatcaaaagatggcacggtaaaaatttgggatgatcgcaagccagttcctctatcaatt
ttgaagccacatgatggtcaagctgtttactcggttgcttttctcacagcaccagagcac
ccagaccatataaacctcgttacagcaggtcctctaaaccgagaagttaaaatttgggct
tctgctaatgaaggaggtgtgttgttgcccagtgattctgagacttggaattgcacacag
accttggaacttgtcagctcgctggaacctagggtagaggaggcatttttcaaccaagtt
acagtgctgcctcatgcaagtattattttacttgcaaatgctaaaaagaatgctatttat
gctgtgcatgttgagtatggcatggatcctgcttccacttgcttggattatatagcagat
tttacagttacaatgcctattttaagtctcactggcacacatgaaagccaacctggcaat
gaacaagttgttcaagtttattgtgttcaaacaatggccatccagcagtatgggttggac
ttatcactctgttcacctcctacaagtgacactgctggacttggaagggatccatctatt
tctcgtgtttatgagacacctctggaagtggtaggaccagagtccacagtgctaactagc
tttagtgaatcttattctgtcagttctccaagtaagccatcaaccgttgatcaacagcct
acagaacttgatcctaaaccatcagctccaccacttacatactcagaaggtgatggttct
gctcatctcccatctgcctctcttgcatcaaacatggacccatctggatcaggatcatca
ctaggcaaccgtgaaatggaccaagcagcttttgattatgcgatgaacaaaaactcagag
cctgatattttgaaaaggcaagatacacccatgcctaaggacaactttgtaaaggatgat
ccaagagatggtcgcagtgatgttacaatgcttccaaatccccatttgatgtttaaggta
ggaggaaacactacacacctggtaactccatctgaaattatatctggcgctctatcttca
gctgagagcagccatgtccctaaatccgatggagggaaaatccaggatgccaccaatagt
ggccctcagatggcagaattagaacctaaacataccaatgatcagaaagtcgatcaaaat
ttggaccttgaagtagcacaacttgtttatgagaatacagatcaagttcgcagttcatca
gagcaagctgttaaaatgattagtgaacgcttggtaacaactgataagtacagcgtggaa
gattcacagacttgtgaccgatccatgtctgagcatactggtaccgctgatgaaagtgtt
acaaagaaacctgtcgaaatctctgagaaaattgattattcttctgcttctatggaccaa
tcatcttcatataccaaggagaaggagccaattatgcatactcaagcatctgggcagtca
tctccttcaacaagcgcattcaactcaactgagtattcacatgaaccggcgaatagtgca
taccctcctatcgattcatttccagaggttgctacgcaagggatgcttcaacagctcata
gccatgcataaggacttgcaaaagcagctgggtactattgttactgcacctcttgcaaag
gaaggcaaaagaattgaggcatcattagggcgcaccatggagaaatctatcaaggctaac
cttgatgtattgtggattcgtatccaggaggagaatgcaaaacgagagaaggctgaaaga
gagcgaatgcagcaaatgatgactcttatcggtagttcaataagcaaggaccttcctgct
actctggagaagtcactcaagaaagaaatttcttcagttggacctgttgttgcacgggca
ataacacctattattgagaagtgttcagcctctgcggttgctgattcaattcagaaagtc
gttggtgaaagggtggcgaatcagctggacaagtctgtcagtgcaaaacttgaagctacc
gttgctagacaaatccaaatgcagtttcatacctctataaaacaggtccttcaggattct
ttacgcactagcttggaatctttccttgttccagcatttgaacaatcttgcaagacaatg
tttgagcaagtcgacagtgcattccagaaaggaatgtctgagcacactattgctattcag
cagcaagttgaggccgcacataccccattggcgcaaactttaaaggatacaatctcttct
gcttcttcaatcacccagaatctcacagcagagttgcttgacggccatcgtaaactattg
gcactgcttgcatctggaaatgcaaaagcgcataatacaaatgttttgcagcccaacaat
gtccctgtgactcgtccacctgaggtcgaggctccattagacccgatgaaggagttgggt
agacttatatctgaacgcaaatttgatgaggcgtttacaatggctctccaaagaagtgat
gtgtcaatagtgtcttggttgtgctcccaggttgatctgcgtgcattgtgctcaatggcc
cccgtcccccttaatcagggggtcctcctagccctattacagcagctagcagttgacatt
gctactgagacgccacggaagattcaatggatgacggatgttgctatggcgataaatcca
accgatccaatgatcgccatgcatgtgaagccaattttcgagcaagtttacaacacactg
gtccacctacgctcactccctaccaccagcccagcagacagcaccaacatccgcttattc
atgcatgtagttaattcagttctgcttagctacaagtga
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integrated database retrieval system
