KEGG   Oryza brachyantha (malo sina): 102702287
Entry
102702287         CDS       T02995                                 
Name
(RefSeq) sm-like protein LSM8
  KO
K12627  U6 snRNA-associated Sm-like protein LSm8
Organism
obr  Oryza brachyantha (malo sina)
Pathway
obr03018  RNA degradation
obr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:obr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    102702287
  09123 Folding, sorting and degradation
   03018 RNA degradation
    102702287
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:obr03019]
    102702287
   03041 Spliceosome [BR:obr03041]
    102702287
Messenger RNA biogenesis [BR:obr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     102702287
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     102702287
Spliceosome [BR:obr03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    102702287
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 102702287
NCBI-ProteinID: XP_006654882
UniProt: J3MAD5
LinkDB
Position
5:20071365..20073427
AA seq 99 aa
MASGGPGLESLVDQIISVITNDGRNIVGTLRGFDQATNIILDESHERVYSTKEGVQQLVL
GLYIIRGDNISVVGEVDEELDARLDLSKLRAHPLKPVIH
NT seq 300 nt   +upstreamnt  +downstreamnt
atggcgtccggcgggccggggctcgaatcgctcgtcgaccagatcatatccgtcatcaca
aacgatggccgcaacattgtgggcacgctcaggggattcgatcaagccaccaacatcatc
ctcgatgagtcccatgagagggtctactctaccaaggagggagtgcaacagcttgttctt
gggctgtacattataaggggcgacaacatcagcgtggtgggggaggtggatgaagagctg
gatgcgaggctggacctgtcgaagctgagagcgcatccgctgaagcctgtgatccactga

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