Oryza brachyantha (malo sina): 102702385
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Entry
102702385 CDS
T02995
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like isoform X2
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
obr
Oryza brachyantha (malo sina)
Pathway
obr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
obr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102702385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
obr03019
]
102702385
Messenger RNA biogenesis [BR:
obr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
102702385
mRNA degradation factors
5'-3' decay
Decapping complex
102702385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ge1_WD40
EDC4_C
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
WD40_Prp19
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WDR55
Beta-prop_TEP1_C
DUF445
Beta-prop_Vps41
Beta-prop_IFT140_1st
Beta-prop_EDC4L
Motif
Other DBs
NCBI-GeneID:
102702385
NCBI-ProteinID:
XP_006656024
LinkDB
All DBs
Position
6:7522732..7531552
Genome browser
AA seq
1291 aa
AA seq
DB search
MASPSGNPNPIPNQPFPELNRLFKQPTPPNPNQPTAAPTPAGIFPGAAPVPPMTSGPYSY
PPATPPFHRGPYLHYPNDPHLPPVSAFAGPSPAPPNPGPGPGPSTNPPGPNPGARLMQLL
GNTAPTHLESAVSMPPPSEFSAPPAPLPAMPSAPPARMPSSKMPRGRLLGPGDRAVHDVD
SRLPGEAQPPQLEVTPITKYTSDPGLVLGRQIAVNRTYIVYGLKLGNIRVLNINTALRSL
LRGHTQRVTDMAFFAEDVHRLASASVDGRIYVWKIDEGPDEQNKPQITGKIEIAIQIVGD
AETYHPRICWHSHKQEILFVGIGNCVLKIDITKVGRGTDFSREEPLKCVLDKLVDGVHLV
GKHDGDITDLSLSQWMTTRLASASKDGMVKIWDDRKSVPLSVLKPHDGQAVYSVSFLTAP
EHPQHINLITAGPLNREVKIWASTNDEGWLLPSETETWRCTQTLELVSSLEHRFEEAFFN
QVAVLPQASLILLANAKKNAIYAVHVEYGPDPASTRLDYIADFTVAMPILSLTGTHESQR
DTEQIVQVYCVQTMAIQQYGLELSLCLPPTADNTGFGRDPAISHVYERPPEVTVVESSTD
TSLIDSSVVGPTKPASNNQALEANVPSQVQSSTPPSSIDLGYLEEGALRKGPSRGPSLGD
RDVDPSSLDYSSKKRMDSDGTSGQGSFGRKDSLGKEEPRGSQGDGVHSSPETAATGSSQN
VEVGDKHVDGRKSEQSVELEAVKETQIVHEKRQRPPKNSEQTVNTISERLVTTDKYSLED
SQSRNADGSVSALLKHPSGAGDENTVSEAPEKTSDSYASRNLQLTSVTREEKVLHPPGQL
SPTSTFNSTDSSHEPLSNINPPIGSVPQVGIQETLQQLMAMHNDLQKQLSTIVHAPIAKE
GKRIETSLGRNMEKSIKANIDAMWARFQEENAKHEKAERERMQQIATLITTSVNKDIPAM
LEKSLKKEISSVGPAVARTTTPIIEKSLSSAVSDSLQKVLGDKVVNQLDKSLSTKLEATV
ARQIQTQFHTSAKQALQDALRSSFESTIIPAFEQSCKTMFEQVDGAFQKGMSEHGAAIWQ
QVATAHTPLAQTLRETIASASSINQGLASELLDGQRKLLALVSSGASLSHNTSVLQPSNG
PVANLPEVDAPLDPVKELSRLISEHKFDEAFTMALQRSDVSIVSWLCSQVDLHELCRMNP
IPLNQGVLLALFQQLACDIVNDTPRKLEWMTAVAVAISPTDPMITVHVRPIFEQVYGVLN
HQRSLPTISPSEATNIRLIMHVINSVLLTYK
NT seq
3876 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgccgtcggggaaccctaaccccatccccaaccagcccttcccggagctcaac
aggctcttcaagcagcccacgcccccgaaccctaaccaacccaccgccgccccgaccccc
gccggcatcttcccgggcgccgcccccgtcccgccgatgacgtccggcccctactcctac
ccgccggccaccccgccgttccaccgggggccctacctccactaccccaacgacccccac
ctcccgcccgtctccgccttcgcggggccgagccccgcgccgccgaaccctggccctggc
cctggtccgagcacgaacccacccggccccaacccgggcgcgcggctcatgcagctgctc
ggcaacaccgcgcccacccacctcgagtccgcggtgtcgatgccgccgccgtcggagttc
tccgcgccacccgcgccgctcccagcgatgccgtcggcgccgccggcgaggatgccgagc
agcaagatgccgagggggaggctcctgggcccaggggaccgtgccgtgcacgacgtggac
tcaaggctgcccggcgaggcgcagccgcctcagctggaggtgacgcccatcaccaagtac
acgtcggacccgggcctggtgcttggccggcagatcgccgtgaaccggacctacattgtg
tacggcctcaagctcggcaacattcgcgtgctcaacatcaacactgcgctccgctcactc
ctccgcgggcatacacagagggttacggacatggctttttttgcggaagatgtccatcgg
ttagcaagtgcaagtgtagatgggcggatctatgtatggaagattgatgagggacctgat
gagcaaaataaaccacaaatcacaggaaagattgagattgccatccagattgtaggagat
gctgaaacttaccatccaaggatatgctggcactctcataagcaagagattctgttcgtt
ggaattggtaattgtgtcttaaaaatagatataacaaaagtgggaagaggaacagacttc
agtagagaagagcctcttaaatgcgtgcttgacaagctggtcgatggtgttcacttggtt
ggtaaacatgatggagatattacagatttgtccctatctcaatggatgactacccgtctt
gcttctgcatcaaaagatggcatggtaaagatctgggatgatcgcaaatcggtgcctctg
tctgttcttaaaccgcatgatggtcaagctgtttactctgtctccttccttacggcacct
gagcatccccagcatataaatctcatcacagcaggtcctctcaatcgagaagtaaaaatt
tgggcttccactaatgatgaaggttggttgttgccaagtgagactgagacatggaggtgc
actcaaacactggagcttgtgagttctctggaacataggtttgaggaagcatttttcaac
caagtagcagtgttgccacaagctagccttattttgcttgcaaatgccaaaaagaatgct
atttatgctgtgcatgttgaatatggcccagatcctgcttccaccagattggactacata
gctgattttacagttgcaatgcctattttaagtttgaccggaacacatgaaagccaaaga
gatactgaacaaatagttcaagtctattgtgtccagacaatggctatccagcagtatgga
ttggaattatctctttgtttgcctcctacagctgataatactgggtttggtagagatcca
gcaatttctcatgtttatgagagacctccagaagtaactgtagtagagtcatccacggat
actagtctgattgattcctctgttgttggtccaaccaaaccagcaagcaataatcaggcc
ctagaagctaatgtcccttcacaagttcaatcctcaactcctccatcaagcattgacctt
ggatatttagaagaaggtgccttaagaaaaggtccttcaagaggtccatctcttggggat
cgtgatgtggacccgtcgtctcttgattattcaagtaagaaaagaatggattctgatggt
acaagtgggcagggttcatttggtaggaaggatagtctcggaaaggaagagccaagagga
agccagggtgatggtgtccattcatctccagaaacggctgctactggcagctctcaaaat
gttgaagtgggtgataagcatgtggatgggagaaaatcagagcaaagtgttgaacttgag
gctgtcaaggagactcaaattgttcatgagaaaaggcagagacctcccaagaactcagaa
caaactgtaaacacaatcagtgaacgcctggtaacaactgacaaatacagtttggaagat
tcacagtctcggaatgctgatggatcagtatccgcgcttttgaaacatccgtctggtgct
ggggatgaaaacactgtaagtgaagctccagagaaaactagtgatagttatgcttctagg
aacttgcagttaacctcagttaccagagaggaaaaagttcttcatcctcctgggcagtta
tctcctacgagcactttcaactctactgattcctctcatgaacctctaagcaacataaac
cctcctattggttctgttccacaagttggtattcaagaaacactgcaacagctaatggcc
atgcataatgacctgcaaaagcagctgagcacaattgtacatgctcctattgcaaaggaa
ggcaaaaggatcgagacatcattaggtcgtaacatggaaaagtccattaaggcaaacatt
gatgccatgtgggcccgtttccaggaggaaaatgcaaagcatgaaaaggctgaaagagag
cgtatgcagcaaatcgctactctaatcacaacttctgtaaacaaggatattcctgctatg
ttggagaagtcactaaagaaagaaatatcttctgttggacctgctgttgcacggacaaca
actcctatcattgagaaatcactatcttctgctgtttctgattcactccagaaagttctc
ggtgacaaggtcgtgaatcaactagataaatcactgagtacaaaacttgaagctacagtg
gctaggcagatccaaacacagtttcatacatctgccaagcaggcacttcaggatgctttg
cggtctagctttgagtcaacaattattccagcatttgaacagtcttgcaagacaatgttc
gagcaagttgatggtgcattccagaagggcatgtccgagcatggtgctgctatctggcag
caggttgcaacagcacatactccactagcacaaactcttagggaaacaatcgcttcagca
tcatcgataaaccagggccttgcatcagagttgcttgatggccagcgcaagcttttggca
ctagtttcatcaggggcttcattatcacataatacaagtgttttgcagcctagtaatgga
ccagtggctaatctccctgaggttgatgctccattggatcctgtcaaggagctaagcaga
ctgatatctgagcacaaatttgatgaagcatttacaatggctcttcaaagaagtgacgtc
tccatagtatcttggctctgttctcaggttgatctgcacgagttatgcagaatgaatccc
attcctctcaaccaaggggtccttctggctcttttccagcagctagcatgtgacattgtc
aatgacacgcccagaaagcttgagtggatgacggcagttgccgtggcgatcagtccaaca
gatcctatgatcacggtgcatgtgaggccaatatttgagcaggtctatggcgttctgaac
caccaacggtcactgccaacgatcagcccctcggaagcgaccaacatccgtttgatcatg
catgtaatcaactcggtgctgctgacctacaagtga
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