KEGG   Oryza brachyantha (malo sina): 102702748
Entry
102702748         CDS       T02995                                 
Name
(RefSeq) HBS1-like protein isoform X1
  KO
K14416  elongation factor 1 alpha-like protein
Organism
obr  Oryza brachyantha (malo sina)
Pathway
obr03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:obr00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    102702748
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:obr03019]
    102702748
Messenger RNA biogenesis [BR:obr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     102702748
SSDB
Motif
Pfam: GTP_EFTU GTP-eEF1A_C GTP_EFTU_D3 GTP_EFTU_D2 GTP_EFTU_D4 MMR_HSR1 Zn_ribbon_RanBP PBP1_TM
Other DBs
NCBI-GeneID: 102702748
NCBI-ProteinID: XP_006652737
LinkDB
Position
4:complement(17492537..17498308)
AA seq 680 aa
MPRKVVSGPDYDDEYGDDYDEYDDDYDDYGETGHGDTQLPMKEEKESLKKSSGAVPVLWR
CSMCMFDNHESMVYCEMCGVFRESFIKSSKDGSIKVNRIPSDSGKPLMPKSDSTKVPLKT
RTADFGGDTEIKNAGISHEKAVSSTQSASVGSSSGTGKKVKHIALPEDVPVERTTQLISD
HFQLKEEQSSRAGSSAENEDAAQKLSSDIHKLGLEKNEVDVAKTCLPEEYKPEKWMFADE
ESGVPSQLNLAIVGHVDSGKSTLSGRLLHLLGKISKKDMHKNEKEAKEKGKASFAYAWAM
DESSEERERGVTMTVAVAYLETKKYRVVLLDSPGHKDFVPNMISGATQADAAILVVDACS
GSFEAGMDGEGGKSVGQTKEHAQLIRSFGVEQLIVAVNKMDAVGYSKERFEFIKVQLGSF
LRSCNFKDSSVIWIPLSAVENQNLINIPSDGHLTSWYQGFCLLEAIDSLQLPSRDVSKPL
ILPICDVIKSQSTGQLAAFGKLETGAIRNGSKVLVSPCGEVATVKTIERDSNSCDIARAG
DNVAVSLLGIEGSKLVPGGVLCNPGFPVLVSNFLELRVLVLDVTIPILVGYQVEFHIHHV
KEAARVTKIVALLDKAGKPSKTAPRFLKSKQNAVVQVTLESPVCVQEFSKCRALGRAFLR
SSGSTIAVGVVMRVLGQDKS
NT seq 2043 nt   +upstreamnt  +downstreamnt
atgccgcgcaaggttgtctctggacctgactacgatgacgagtacggcgatgactacgat
gagtatgatgatgactacgatgattatggcgagaccgggcatggtgacactcagctcccc
atgaaggaggagaaagagtcattgaagaagtcctcaggtgcagtgcctgtgctttggaga
tgctctatgtgcatgtttgataatcacgaaagcatggtgtactgtgagatgtgtggggtt
tttcgagaatcctttataaaatcttccaaggatggttcaatcaaagtcaatagaatacca
agtgattctgggaaacctttgatgccgaaatcagattctaccaaggtgcctctgaagact
cgtactgcagactttggtggtgacactgagataaagaatgctggcatatctcatgaaaaa
gcagttagttccacacagtctgcatctgttggtagctcatcaggcactgggaaaaaggtg
aaacacatcgcacttcctgaagatgtgcctgtcgagaggacaactcaattgatttctgat
cattttcagctgaaggaggaacagagtagtagggctggcagttctgctgagaatgaggat
gcagcccagaaactttcttctgacatccacaagctaggtttagaaaagaatgaagttgat
gttgcaaaaacttgtttacccgaagaatataagcctgagaagtggatgtttgctgatgag
gaatcaggagtgccgagccaactaaaccttgcaatagtgggtcatgttgattctggcaaa
tcaacactctctgggagactgctacatctactaggaaagatatcaaaaaaagatatgcac
aagaatgagaaggaggctaaagaaaaaggaaaagcatcatttgcttatgcatgggctatg
gatgagagcagtgaagaaagagaaagaggtgtgacaatgactgtggctgtggcttattta
gagaccaagaagtaccgtgtagttttgcttgactccccgggccataaagattttgtacca
aatatgatatctggtgcaacacaagctgatgcagctattcttgttgttgatgcttgctct
ggctcgtttgaagctggcatggatggtgaaggagggaaaagtgttggccagacaaaggaa
catgctcagcttattagaagcttcggtgttgaacagcttattgttgcggtcaacaagatg
gatgctgttggatactccaaagaaagatttgagttcatcaaggtccaacttggtagtttt
ctgcggtcatgcaacttcaaagactcatctgttatctggattcctcttagtgctgttgaa
aatcagaatttgatcaatatcccttctgatggccatttaacctcctggtatcaaggattt
tgtctcttggaagctatagattccttgcagcttccatctcgggatgtttcgaagccacta
attcttcctatctgtgatgttatcaagtctcagtcaacagggcagttggcagcatttgga
aaattagagactggagctattcgaaatggttcaaaggttttagtttcaccttgtggggaa
gtggcaacagtgaaaaccatcgaacgcgactcaaactcatgtgacatagcaagagctggt
gataatgtagcagttagtttactgggtattgaggggagtaagctagtaccaggtggggtt
ctttgcaaccctggtttcccagtgcttgtgtcaaacttcttggagctaagggttctagtg
ttggacgtcaccattcctatccttgttggctaccaggtggaatttcacatacatcatgtg
aaggaagctgcaagggttacaaaaatcgtggcattgcttgacaaggctgggaaaccaagc
aaaactgcacctcgatttcttaaatcaaagcagaatgctgttgtgcaggttaccctagag
tctccagtctgtgttcaagaattctccaaatgccgagctcttggcagggcattcttaagg
tcgtctggaagcacaatcgctgttggagtcgtaatgcgggtactcgggcaagataagagc
tga

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