Oryza brachyantha (malo sina): 102702824
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Entry
102702824 CDS
T02995
Name
(RefSeq) SNF2 domain-containing protein CLASSY 3-like
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
obr
Oryza brachyantha (malo sina)
Pathway
obr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
obr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
102702824
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
obr03400
]
102702824
DNA repair and recombination proteins [BR:
obr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
102702824
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
102702824
NCBI-ProteinID:
XP_040376569
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All DBs
Position
2:19543493..19550295
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AA seq
1381 aa
AA seq
DB search
MRGALRVTMTGRRPASAIASRRRSPRAESSRRRDVAVARGSSPIDVDSERLGEVLRIGGR
GEGVARVKAEPHSGSESDGDEAGGRARVPVAAAKQRKRGRESPSRGQKRRVGARVKEEPN
SGSDSDGNAAGRRARFPVAAAKQRKRGRETPSRGQERPTGVRVKKDPHSGSDSDGNGAGG
SALAPVAAAKQRNQGTKAARTSRAQEGRAVVGETPTSAARSNGAPSSAKARAGGHERGRQ
RNEGSGRSCPTPVSRVSVGVGSRTRSRSSEQRRVQSAEYVAWEQQKEVEDKDSDLEVVAE
EEEEEEDNEEVMVVRSNNIENGNGEVNEKGRTDHDVEEREEKGSGTDEDGVSDDSDETFS
EERDEDESDKEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEEPNEEPDQPAEAGEK
LPSRSGLRGRQLIGKRMFEGLYFPEQVETTSGSNIGARTRSNFKHKKLLDRKLLKRGTFS
KPYCIDVSESSSESVEPQPEQVQGQPAFSGDSLDDGSSGEKRRAVKRRKLNRRRSCHSDS
EEDAPCVPDAREGSGSRSRRGQKGASYRQASRAGDKKKDGSTPHSVGKNGAKAGGQTNGL
DGQNGVSFKRNAQKRKRGRARADQEKYGHLLDPMFDEIESNQYEPVPEEQIDKRLPLIFA
FGDDDEPEKDSTHNKLQDEDELWTEFDFALESINVCSHNCEEHEKNDEQEIPADKAASCS
QGKHELFIDEQIGVRCKHCHYVDLEIRFVLPSMVKSYAEREMKKDHDLDLVFDDILTSVG
YEGPRDFGGDKTVLVWDLVPGVREDMFPHQREGFEFMWRKLAGGISIEQLKHTVGTIEGG
CVISHAPGTGKTRLAITFVQSYFEFFPECCPVIIAPRGMLATWEQEFRKWKVKVPFHVLN
SNEINWNEDKTIKYLATMDEKLAQSLARNKLDQKFRRKLKLASWRKGSSIIGVSYSLFRK
LANHDGIDGLMVRNLLLEKPDLLVLDEGHTPRNKKSLIWKVLAKVRTEKRIILSGTPFQN
NFLELYNILYLVRPKFARDFASKSFKKKGFASRTSRSREMLLGKDDEGKDFWTSLKLNNI
TEENIDEIRKILDPIVHIHNGDILQKSLPGLRESVVVLNPLPHQKEIITAMENTVAMGTL
DSEYKISLASIHPFLITCTKLSENETSCVNVSLLKSLRPNPCEGVKTRFVLEIVRLCEAM
KERVLVFSQYLEPLSLIVDQLSKMFSWTEGKEILLMSGNVLVKNRGALMEAFNDMKSDAK
VMLASTKACCEGITLIGASRVVLLDVVWNPSVGRQAIGRAYRIGQEKIVYTYNLITEGTK
EKDKYDRQGRKDQMSKLLFSKELQPSGFNLSQEVIFNDKILEAMTSHEELKDMFVKILPS
Y
NT seq
4146 nt
NT seq
+upstream
nt +downstream
nt
atgcgcggagcgctgagggtgacgatgacagggaggcgccctgcgtcggcgatcgccagc
cggcggcggagcccccgcgcggagtcctcgcgacgtcgggacgtcgcggtggcccgcggc
tccagccccatcgacgtcgacagcgagcggcttggggaggtgcttcggataggcgggaga
ggcgagggcgtggcgcgcgtcaaggcggagccgcattccggaagcgagtccgacggcgac
gaggcgggaggtcgtgcgcgggtgccggtcgccgccgcgaagcagaggaagcgtggaagg
gaatccccaagcagaggccagaagcgccgggtgggtgctcgcgtcaaggaggagccgaat
tccggaagcgattccgacggcaatgcagcgggacgtcgtgcacggtttccggtagccgcc
gcgaagcagaggaagcggggacgggaaaccccaagcagaggccaggagcgccccacaggt
gttcgcgtcaaaaaggacccgcactcaggaagcgattccgacggtaatggggcgggaggt
agtgcactggcgccggtcgccgccgcgaagcagaggaatcagggaacaaaagccgcacgc
acaagcagagcccaggagggccgggcggttgttggcgagactcccacctccgccgctcgg
tcgaatggtgctccctcctccgccaaggcgagagctggagggcatgagagaggtcgccag
agaaacgagggctctggtcggagttgccctacgccggtgagccgggtaagcgtaggggtt
ggttcgaggactcggtcacgctcctccgagcagaggagagtgcagtctgcagagtatgtt
gcatgggagcaacaaaaagaggtggaggacaaggacagtgacctggaagtggtggcagag
gaggaagaagaagaagaagacaatgaggaggtgatggtggtccgttcaaacaacattgaa
aatggcaatggtgaagtcaatgagaaaggcagaacggatcatgatgttgaggagagagag
gagaagggatcagggacggatgaagatggggttagtgatgacagtgatgagaccttcagt
gaagaaagggatgaagatgaatcagacaaggaggaggaggaggaggaggaggaggaggaa
gaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaa
gaagaagaagaagaagaacccaatgaggaacctgatcaaccagctgaggccggtgagaaa
ttgccttcccgttcaggactcaggggaaggcagttgatcgggaagaggatgtttgagggg
ttgtattttccagaacaggtggaaaccaccagtggcagcaacatcggagctcgcacgcga
tcaaatttcaagcacaagaagctcctggacaggaaactgctcaagcgtgggacattcagc
aagccgtactgtatcgatgtgtcggagtcgagctcggagtcggtggaaccacagccggag
caggtccagggccagccggcattcagcggggatagcttggatgatggcagcagcggtgag
aaacgcagagctgtgaaaaggaggaaattgaacaggagacgaagttgccatagtgatagc
gaggaggatgcaccatgtgtacctgatgccagggagggatcaggttctaggagtaggagg
ggacaaaaaggagcatcctaccggcaggcttccagggcgggtgacaagaaaaaggatggt
tctactccacacagcgtcgggaagaatggtgcaaaggccgggggccaaacgaacgggctc
gatggacagaatggcgtatccttcaagagaaatgctcagaagaggaagcgtgggcgagca
agggcagaccaagaaaagtatggccatctgctcgaccccatgtttgatgaaatagaaagc
aatcaatatgagcctgttcctgaagagcaaatcgacaagagattgcccctgatattcgca
tttggggatgacgatgagcccgagaaggactccacacataacaagttgcaggacgaagat
gaactgtggacagagtttgattttgctctggaatccatcaatgtttgctctcataactgc
gaggagcacgaaaagaatgatgagcaagaaattcctgcggacaaagcagcttcatgcagt
caagggaagcatgagctctttattgatgagcaaataggtgttagatgcaagcactgccac
tatgttgatcttgaaatcagattcgtgcttccctccatggtgaagtcctatgctgaaagg
gagatgaaaaaggatcatgacttagacttagtttttgatgatatcctaacatcagtggga
tatgaaggaccacgtgattttggtggtgataaaactgtcctggtttgggatctcgttcct
ggggtccgggaagacatgttcccacaccagcgggaaggttttgagttcatgtggagaaaa
ctagcaggggggatttccattgaacagctgaagcacactgtgggcactattgaaggtggc
tgtgtgatttctcatgccccagggacagggaagaccagactagcaatcacatttgtgcaa
tcttactttgagtttttcccagagtgttgcccagtgataattgctcctagagggatgctt
gctacatgggaacaagagttcagaaaatggaaggtaaaggttccttttcatgtgttgaat
tctaatgagattaactggaatgaagacaagaccatcaaatatctggctaccatggatgaa
aaattggcacaaagtttagccagaaacaaattggaccagaaatttaggcgaaagttgaag
ttggcgtcatggcgtaaagggagcagcataattggtgtgagctattcgcttttcaggaaa
ctggcaaaccatgacggaatagatgggctcatggtgaggaatctgctccttgagaagcct
gacttgttggtccttgatgagggacacacaccaaggaacaagaaaagccttatatggaag
gttcttgcaaaagttcgcactgaaaagcgaataattctatcagggactccatttcagaac
aactttctagagctttataatatcttgtacctggttagaccgaagtttgcaagggatttt
gcttctaaaagtttcaagaaaaaaggcttcgcttcaagaaccagccgatcaagagagatg
cttcttgggaaggatgatgaaggcaaggatttctggacttcattaaaactaaataacatc
acagaggaaaatatagatgaaatccggaaaatacttgatccaattgtgcacatccataat
ggtgacattcttcaaaagtctcttccaggcttgagggaatcagttgtggttctgaatccc
cttcctcatcagaaggaaatcatcacggcgatggaaaatactgtggcaatggggactctt
gattcagaatacaagatctcccttgcatctatacatccgttcctcatcacatgtacaaaa
ctgtcggagaacgaaacatcttgtgtgaatgtgtccttactgaagagtttacggccaaac
ccatgcgagggggtcaagacaaggtttgttttggaaattgttcgtctgtgtgaagccatg
aaagagcgagtgcttgtgttcagtcagtatcttgaaccactctctttgatcgtggatcag
cttagtaaaatgttcagttggactgaaggcaaggagatccttctgatgagtggaaatgtc
ctagttaaaaatcgaggagccttgatggaggccttcaatgacatgaaaagcgatgccaag
gtaatgcttgcatcaaccaaggcgtgctgtgaaggcatcacactcattggggcatcacgt
gtggttctccttgatgttgtgtggaatccttctgttggaaggcaggcgattggccgagct
tatagaattggtcaagagaagattgtgtatacatacaatttaataacagaaggaacaaaa
gagaaagacaaatacgacagacaaggaagaaaggatcaaatgtccaaactgctgttttca
aaagaactccaaccttcagggttcaacttatctcaagaagtgatattcaatgacaagata
ttggaagcaatgacatcacatgaggagctcaaagacatgtttgtgaagatcctcccttct
tattaa
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