KEGG   Oryza brachyantha (malo sina): 102703206
Entry
102703206         CDS       T02995                                 
Name
(RefSeq) replication factor C subunit 4
  KO
K10755  replication factor C subunit 2/4
Organism
obr  Oryza brachyantha (malo sina)
Pathway
obr03030  DNA replication
obr03410  Base excision repair
obr03420  Nucleotide excision repair
obr03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:obr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    102703206
   03410 Base excision repair
    102703206
   03420 Nucleotide excision repair
    102703206
   03430 Mismatch repair
    102703206
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:obr03032]
    102703206
   03036 Chromosome and associated proteins [BR:obr03036]
    102703206
   03400 DNA repair and recombination proteins [BR:obr03400]
    102703206
DNA replication proteins [BR:obr03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    102703206
  DNA Replication Termination Factors
   ELG1-RFC complex
    102703206
Chromosome and associated proteins [BR:obr03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    102703206
DNA repair and recombination proteins [BR:obr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     102703206
  Check point factors
   HRAD17(Rad24)-RFC complex
    102703206
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 AAA_14 AAA_22 Mg_chelatase AAA_16 Rad17 Viral_helicase1 AAA_5 RuvB_N nSTAND3 AAA_11 AAA_28 RCF1-5-like_lid AAA_24 AAA_assoc_2 AAA_19 AAA_25 AAA_30 MeaB RNA_helicase DNAX_ATPase_lid AAA_3 ABC_tran IstB_IS21 SLFN-g3_helicase bpMoxR NTPase_1 AAA_18 NPHP3_N DO-GTPase1 DUF6120 DNA_pol3_gamma3 KTI12 DNA_pol3_delta_C
Other DBs
NCBI-GeneID: 102703206
NCBI-ProteinID: XP_006652657
UniProt: J3M0I3
LinkDB
Position
4:16462802..16465980
AA seq 335 aa
MAASSSATAPALAEAYDIPWVEKYRPTRVADVVGNSDAVSRLEVIARDGNMPNLILSGPP
GTGKTTSILALAHELLGPSYREAVLELNASDDRGLDVVRNKIKMFAQKKVTLQPGRHKVV
ILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLSDQEI
LGRLMVVVAAEKVPYVPEGLEAIIFTADGDMRQALNNLQATVSGFRFVNQENVFKVCDQP
HPLHVKNMVKNVLDGKFDEACSALKQLYDLGYSPTDIITTLFRVIKNYDMAEYLKLELLK
ETGFAHMRICDGVGSFLQLSGLLAKFALVRETAKA
NT seq 1008 nt   +upstreamnt  +downstreamnt
atggccgcctcctcctccgccaccgcccccgccctcgccgaggcctacgacatcccgtgg
gtggagaagtaccgccccacccgcgtcgcggacgtcgtcggcaactccgacgctgtaagc
cgcctcgaggtcatcgcccgcgacggcaacatgccaaacctaatcctctccggacctccg
ggcacggggaaaactacgagcatcctggcgctggcgcacgaactgctcggacctagctac
cgcgaggccgtgctggagctcaatgcctcggacgacaggggtctggacgtggtgcggaac
aaaatcaagatgtttgcgcagaaaaaggtcacgctgcaaccagggcggcacaaggttgtc
atcttggatgaggccgacagcatgacgtctggagcacagcaagcactaaggagaacaatg
gaaatctattccaacaccacaaggtttgcacttgcgtgcaacacttcgtctaagatcatt
gaacccattcaaagccgttgtgctattgtacgattctcaaggctctctgatcaggaaatt
cttggccgactcatggttgtggtggcagctgagaaggttccttatgtgccagaggggctc
gaagcaatcatctttactgctgatggtgatatgaggcaagctttgaacaacttgcaagct
acagttagtgggtttcgttttgttaatcaagaaaatgtgttcaaggtatgtgatcagcca
catccattgcatgtcaagaatatggtgaaaaatgtcctcgatggaaagtttgatgaggcc
tgctctgctctgaagcaactatatgatttggggtactctcccactgacataatcactact
ctcttccgggttatcaagaactacgacatggctgaatatctaaaactggaactgctgaag
gaaactggatttgctcacatgagaatctgtgatggtgttgggtcattccttcagctatca
ggccttctcgcaaaatttgcgttggtgagagaaacagcaaaagcatga

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