Oryza brachyantha (malo sina): 102703850
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Entry
102703850 CDS
T02995
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
obr
Oryza brachyantha (malo sina)
Pathway
obr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
obr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102703850
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
obr03041
]
102703850
03009 Ribosome biogenesis [BR:
obr03009
]
102703850
Enzymes [BR:
obr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
102703850
Spliceosome [BR:
obr03041
]
Complex A
U2 snRNP components
U2 related factors
102703850
Complex B
102703850
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
102703850
Ribosome biogenesis [BR:
obr03009
]
Eukaryotic type
90S particles
Helicases
102703850
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
ABC_tran
ResIII
nSTAND3
SRP54
T2SSE
AAA_30
AAA_7
AAA_29
Motif
Other DBs
NCBI-GeneID:
102703850
NCBI-ProteinID:
XP_006649980
UniProt:
J3LN67
LinkDB
All DBs
Position
3:9714839..9718803
Genome browser
AA seq
721 aa
AA seq
DB search
MGTERKRKVSLFDVVDETSVSAKLGRAATTNGAAAAGANPSINRWTGRPYSARYLEILEK
RRTLPVWQQKDEFLTVLRDNQTLILVGETGSGKTTQIPQFVLDAEGLSNRSMVACTQPRR
VAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSHKTVLKYLTDGMLLREAMADPLLERYK
VIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQTYFSGAPLMKVPGR
LHPVEIFYTQEPERDYLEASIRTVVQIHMCEPAGDILVFLTGEEEIEDACRKINKEVNNM
GDQVGPVKVVPLYSTLPPALQQKIFEPAPAPLKEGGPPGRKIVVSTNIAETSLTIDGIVY
VIDPGFSKQKVYNPRIRVESLLVSPISKASAHQRAGRAGRTQPGKCFRLYTEKSFNDDLQ
PQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDEGNL
TPLGEIMSEFPLDPQMSKMLVISPKYNCSNEILSISAMLSVPNCFLRPRDSQKAADESKA
RFGHIDGDHLTLLNVYHAYKQNNEDIQWCYDNYINSRALKSADNVRQQLVRIMTRFNLKM
CSTDFNSREYYVNIRKAMLSGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKPEWVI
YNEYVLTTRNFIRTVTDIRGEWLIDIAPHYYDLSNFPSCEAKRVLERLYNKRERERAANR
N
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggggacggagcggaagcgcaaggtgagcctcttcgacgtggttgacgagacctccgtc
tccgccaagctcggccgcgccgccaccaccaacggcgccgccgccgccggggccaacccg
tccatcaatcggtggacggggaggccttactcggcgcggtacctcgagatcctcgagaag
cgccgtacgctccccgtgtggcagcagaaggacgagttcctcaccgtcctccgggacaac
cagaccctcatcctcgtcggagaaactggaagcggcaagaccactcagatcccccaattt
gtgctcgatgctgaaggcttgagcaaccgctcaatggtcgcttgcacccagccgcggagg
gtggcagctatgtcagtctcccggcgtgttgcggaggagatggatgttactatcggggag
gaagttggttacagcatccgttttgaggattgcagtagtcacaaaacagttctcaaatat
ttgacagatggtatgcttctgagagaagctatggcagacccacttttagagaggtacaag
gtgattgttcttgatgaggcccatgagcgaacattagcaacagatgttctatttgggctt
ctgaaggaggttctaaagaatagacctgatttgaagcttgttgttatgagtgctaccctt
gaggccgagaaatttcagacttatttcagtggtgcaccattgatgaaggttcctggaaga
cttcatccagttgagatcttttacacgcaagaaccagaaagagactacctagaagcttct
atcaggacagttgtgcagatacatatgtgtgagcctgctggagatatccttgttttcctt
actggagaggaggagattgaggatgcctgccggaaaataaataaggaagttaataacatg
ggggatcaggttggcccagttaaagttgtgcctttgtattctacgcttcctccagcattg
cagcagaagatttttgaacctgctccagccccattgaaagagggaggcccccctggaagg
aaaattgttgtgtccacaaacattgctgagacatccttaaccatcgatggtatagtgtat
gtgatagacccagggttttccaaacaaaaggtttacaatccaaggataagggtggagtcc
cttctggtttcgccaatttcaaaggctagcgcacatcagagagctggtcgtgctggaaga
acgcaacctggaaagtgtttcaggttatacacagagaagagttttaatgatgatttacag
ccacagacgtacccagaaattcttaggtcaaatctggcaaatacggttcttaccttgaag
aagcttgggattgatgatttagtgcattttgactttatggatcctcccgcaccagaaact
ttaatgagggccttagaagttcttaactatttgggggcactcgatgatgaaggaaacctc
actcctttaggtgaaataatgagtgaatttcctctagatcctcagatgtcaaagatgctt
gtcatcagtccaaagtacaactgttcaaacgagatcctttcaatatctgccatgctgtca
gtacccaattgctttctccggcctagggattcacagaaggctgctgatgaatcgaaagct
cgatttggccacattgatggggaccacctgacacttctaaacgtgtaccatgcatacaag
cagaacaatgaagatatccagtggtgttatgataactacatcaattccagagctctaaag
tctgctgataatgttaggcaacagcttgttcgcatcatgaccagatttaacctcaagatg
tgcagcacagactttaatagtcgggaatactacgtcaatataaggaaagccatgctttca
gggtacttcatgcaggttgctcacctggagcgaacaggacattacctgaccgtcaaagat
aaccaggttgtccatcttcacccttccaactgtctggaccataagccagagtgggtaatc
tacaacgaatatgtcctgacgaccaggaatttcatccgcactgtcactgatatccgtgga
gaatggctgattgatatagctccacactattacgaccttagcaatttcccctcatgcgag
gcaaagcgcgtccttgagaggctgtacaacaagcgggagagggaaagagctgctaacaga
aactga
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