KEGG   Oryza brachyantha (malo sina): 102704710
Entry
102704710         CDS       T02995                                 
Name
(RefSeq) histone deacetylase 1
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
obr  Oryza brachyantha (malo sina)
Pathway
obr03082  ATP-dependent chromatin remodeling
obr03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:obr00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    102704710
   03083 Polycomb repressive complex
    102704710
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:obr03036]
    102704710
Enzymes [BR:obr01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     102704710
Chromosome and associated proteins [BR:obr03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     102704710
   HDAC complexes
    Sin3A-HDAC complex
     102704710
    BRAF-HDAC complex
     102704710
    REST complex
     102704710
    SHIP complex
     102704710
    MiDAC complex
     102704710
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     102704710
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    102704710
  Chromatin remodeling factors
   NuRD complex
    102704710
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 102704710
NCBI-ProteinID: XP_006656189
UniProt: J3MFB9
LinkDB
Position
6:complement(15722377..15728637)
AA seq 518 aa
MDASAGGGGNSLPTTGADGAKRRVCYFYDAEVGNYYYGQGHPMKPHRIRMTHALLAHYGL
LDQMQVLKPHPARDRDLCRFHADDYVSFLRSVTPETQQDQIRALKRFNVGEDCPVFDGLY
SFCQTYAGGSVGGAVKLNHGHDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKYHQ
RVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGHSKGKYYSLNVPL
DDGIDDESYQSLFKPIMGKVMEVFRPGAVVLQCGADSLSGDRLGCFNLSIRGHAECVRFM
RSFNVPLLLLGGGGYTIRNVARCWCYETGVALGHELTDKMPPNDYYEYFGPDYTLHVAPS
NMENKNTRQQLDDIRSRLLDNLSKLRHAPSIQFQERPPEAELPEQDEDQDDPDERHHADS
DVEMDDVKPLDDSGRRTSIQNVRVKRESAETDAIDQDGNRVTAEHTKGTEPVADGVGSSK
QTVPNDASAMAIDEPGTLKVEGDNSNKLQDQPSVHQKP
NT seq 1557 nt   +upstreamnt  +downstreamnt
atggacgcctcggccggcggcggggggaactccctgccgacgaccggcgcggacggggcg
aagcgccgggtgtgctacttctacgacgcggaggtggggaactactactacgggcagggc
cacccgatgaagccccaccgcatccggatgacccacgcgctgctcgcccactacggcctc
ctcgaccagatgcaggtgctcaagccccacccggcccgcgaccgcgacctctgccgcttc
cacgccgacgactacgtctccttcctccgctccgtcaccccggagacccagcaggaccag
atccgcgcgctcaagcgtttcaacgtcggcgaggactgccccgtcttcgacggcctctac
agcttctgccagacctacgccggcggctccgtcgggggcgccgtcaagctcaaccacggc
cacgacatcgctatcaactgggccggcggtctccaccacgcgaagaagtgcgaggcctcc
ggcttctgctacgtcaacgacatcgtcctcgccatccttgagctcctcaagtaccaccag
cgtgttctttatgtggatatcgatatccaccatggggatggtgtggaagaggcattttac
acgacggacagggtgatgacggtctcattccataagtttggggattatttcccggggacg
ggggacattcgcgatattgggcactccaaggggaagtattactccctaaatgtcccattg
gatgatggtattgatgatgagagctaccagtccttgttcaagcccatcatggggaaggtg
atggaggtttttcgccctggcgcggttgttctccagtgtggcgcagactctttgtctggt
gacaggttgggttgcttcaacctatcaatcagggggcatgcggaatgtgtgagattcatg
aggtccttcaacgtcccgctgttactgcttggtggtggtgggtataccataagaaatgtt
gcacgatgttggtgctatgagacaggagttgcacttggtcatgagctcactgacaagatg
cctccaaatgattattatgagtattttggtccagattatacacttcatgttgcaccaagt
aacatggagaacaaaaacacacgccagcaattggatgatataagatcaagactccttgat
aatctttcaaaacttcgacatgctcctagcatccaatttcaagagcgaccccctgaggct
gagctacctgagcaagatgaagaccaagatgatcctgatgaaagacaccatgctgattct
gatgtggaaatggatgatgtcaaacctttggatgactcaggaaggaggaccagtattcag
aatgtgagagttaagagagagtctgctgaaacagatgccatagatcaggatggtaataga
gtcactgcagagcacacgaagggcacagaacctgtggctgatggagttggttcctcgaaa
caaactgttcctaacgatgcaagtgcgatggccatagatgaaccaggcaccctaaaagtt
gagggagataactcaaacaaattgcaggatcaaccttcggtgcaccagaagccatag

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