Oryza brachyantha (malo sina): 102704890
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Entry
102704890 CDS
T02995
Name
(RefSeq) DNA mismatch repair protein MSH2
KO
K08735
DNA mismatch repair protein MSH2
Organism
obr
Oryza brachyantha (malo sina)
Pathway
obr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
obr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
102704890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
obr03400
]
102704890
DNA repair and recombination proteins [BR:
obr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
102704890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_II
MutS_IV
MutS_I
ATG17_like
Polo_box_3
Serine_rich
Syntaxin_2
Motif
Other DBs
NCBI-GeneID:
102704890
NCBI-ProteinID:
XP_006655161
UniProt:
J3M5K3
LinkDB
All DBs
Position
5:complement(7554988..7563366)
Genome browser
AA seq
942 aa
AA seq
DB search
MEGEDFLPEGGKLPELKLDVRQVQGFISFFKKLPQDSRAVRFFDRRDYYTAHGENATFIA
KIYYHTMSALRQLSSNSDGLSSVSVSKTMFETIARNILLERTDRTLELYEGSGSSWRLTK
SGTPGNIGSFEDILFANNDMQDSPVTVALFPVFQEGQLYVGLSFVDLTNRKLGLSEFPED
SRFTNVESALVALGCKECLVPADCEKSIDLKPLQDAITNCNVLLTERKKGEFKSRDLVQD
LARIIRGSVEPVCDLVSQFDFALAALGALVSYAELLADDTNYGNYTIEKYNLDRYMRLDS
AAVRALNIAEAKTDVNKNFSLFGLINRTCTAGMGKRLLNRWLKQPLLDVNEINDRLDIVQ
AFVEDPELRQGLRQQLKRMPDIDRLAHALRKRTPNLQPVVKLYQSCIRVSYIKDVLQQSD
GNFSSLIRTKFLNSLDEWLTKDRFGRFASLVETAIDLDQLENGEYRISPRYSSDLAVLKD
ELSEVENHINNLHKHTATDLDLSVDKQLKLEKGSIGHVFRISKKDEQKVRKKLTNNYIII
ETRKDGVKFTSSKLKNLGDQYQALFGEYTSCQKKVVDDVVKVSATFSEVFENFAAILSEL
DVLQSFADLATSCPIPYIRPEITTSEEGDIILEGSRHPCLEAQDSVNFIPNDCTLVRGKS
WFQIITGPNMGGKSTFIRQVGVNVLMAQIGSFVPCDRASISVRDCIFARVGAGDCQLRGV
STFMQEMLETASILKGASDKSLIIIDELGRGTSTYDGFGLAWAICEHLVEVTRAPTLFAT
HFHELTALGHKNGDEHQHTPSFGIANYHVGAHIDPSSRKLTMLYKVEPGACDQSFGIHVA
EFANFPEAVVALAKSKAEELEDFSTAPNYSDDSKDEVGSKRKRVFSPDDVTRGAARVRLL
LEGIATLPLDDMDGTKVTETVAKLKSEFEKDSADNPWLQQFL
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atggagggcgaggacttcttgccggagggcggcaagctccccgagctcaagctagatgtg
aggcaagtgcagggcttcatctctttcttcaagaagctcccgcaggattcgagggctgtt
cgtttcttcgatcggcgggactactacactgctcatggtgagaatgccacgttcattgca
aaaatatactatcacacaatgtctgccttacgccaattaagtagtaactctgatggactc
tcaagtgtcagcgtgagcaagaccatgtttgagaccatcgcccgcaacattttgttagaa
aggactgaccgtacattggaactctatgagggaagtgggtctagctggaggttaacaaaa
tctggaacacctggaaatattggcagttttgaagatattctgtttgcaaacaatgacatg
caagattctcctgtcactgttgcactctttcctgtgttccaggaaggccaactatatgtg
ggtcttagttttgtggatttgacaaacaggaaacttgggttgtctgaattccctgaagat
agtcgattcacaaatgttgaatcagcccttgttgcattaggttgcaaggagtgtcttgtc
ccagcagattgtgagaaatcaatagatttgaagcctcttcaggatgctattactaactgc
aatgttttattaactgaaagaaagaagggtgaatttaaatctagagatcttgttcaggat
cttgccagaataatcagaggctctgttgagccagtctgtgatcttgtatctcagtttgac
tttgcactggctgcccttggtgctctagtctcatatgctgagttgctagcagatgataca
aactatggaaattacacaattgagaaatacaatttggaccgctacatgcgtcttgattct
gctgctgtgcgagcattgaatattgccgaagctaaaactgatgtaaacaagaacttcagt
ttgtttggtttgatcaacagaacctgtacagctgggatgggaaagagactgcttaacaga
tggctgaaacaacctctgctagatgtaaatgaaatcaatgatagattagatatagttcag
gctttcgttgaagatccagagcttcgtcaaggacttaggcaacaactcaaaagaatgccg
gatattgaccgtctggctcatgctctccggaagagaacacccaatctgcagcctgttgtc
aagctctaccagtcctgcattagagtctcatacatcaaggatgttcttcaacaatctgat
ggcaatttttcttcgttgataaggaccaagtttcttaactctttagatgagtggttgaca
aaggatcgatttggtaggtttgcttctcttgttgagacagctattgaccttgatcaactt
gagaatggtgagtacaggatatctcctcgatattcttctgatttggctgtattgaaggat
gagctttctgaagttgaaaatcacatcaacaatttgcacaagcatacagctactgatctg
gatctttctgttgataagcaattgaagctagaaaaagggtcaataggccatgtgttcaga
atctcaaagaaagatgaacagaaggttaggaaaaagctcactaacaattacataatcata
gaaactcgtaaagatggtgtgaagttcacaagctccaaacttaaaaacctgggtgaccaa
taccaggcactgtttggtgagtacacaagttgtcagaaaaaggttgttgatgatgtagta
aaagtttcagccactttctcagaggtatttgaaaactttgctgcaatactatctgagttg
gatgttttgcaaagttttgctgatttagcaacaagttgcccgattccttatataagacca
gaaatcacaacatcggaggaaggagatatcattttagaaggtagcagacatccatgtctg
gaggcccaagatagtgttaactttataccaaatgattgcactttggtgagaggaaaaagt
tggtttcagatcatcactggaccaaacatgggtggaaagtccacctttatacgacaggtt
ggtgttaatgtcctgatggcacaaattggatcattcgttccatgtgatcgggctagcata
agtgtgagagattgtatttttgctcgtgttggtgctggtgattgccagctacgtggtgtt
tcaacctttatgcaagaaatgcttgaaacagcatccattttgaaaggtgcatcagacaag
tctcttattattatcgatgagttggggcgtggaacttccacatatgatggatttggtctt
gcatgggctatctgtgagcatcttgtggaagtgactagagcacctacattgtttgcaact
cactttcatgaattaactgcattaggacataaaaatggtgatgagcaccagcatactcca
agttttggaattgcaaattaccatgtgggtgcacatatagacccatcaagtcggaagttg
actatgctttataaggttgaacctggtgcatgtgaccaaagctttggcatccatgttgca
gaatttgctaattttccagaagctgttgttgctcttgcaaaaagcaaagcagaagaatta
gaagatttttccaccgcacccaattattctgatgattcaaaagatgaggttggatctaaa
cgcaagagggtgtttagcccagacgatgtgactagaggagctgctcgggttcgccttctg
ttggagggaatcgccacattgccactagacgatatggatggcaccaaggtcacagaaacc
gttgctaaactgaaatccgaattcgagaaagattcagctgacaatccttggcttcagcag
tttctctaa
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