Oryza brachyantha (malo sina): 102705629
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Entry
102705629 CDS
T02995
Name
(RefSeq) protein ANTHESIS POMOTING FACTOR 1
KO
K14962
COMPASS component SWD2
Organism
obr
Oryza brachyantha (malo sina)
Pathway
obr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
obr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102705629
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
obr03019
]
102705629
03036 Chromosome and associated proteins [BR:
obr03036
]
102705629
Messenger RNA biogenesis [BR:
obr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
102705629
Chromosome and associated proteins [BR:
obr03036
]
Eukaryotic type
Histone modification proteins
HMT complexes
COMPASS/SET1 complex
102705629
COMPASS/SET1 complex (yeast)
102705629
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
Beta-prop_EML_2
WD40_CDC20-Fz
WD40_WDHD1_1st
EIF3I
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
WDR55
Beta-prop_EML
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_TEP1_C
Beta-prop_SPT8
Beta-prop_WDR19_1st
WD40_MABP1-WDR62_1st
eIF2A
PQQ_3
Beta-prop_DCAF12
Beta-prop_Nup120_160
WD40_RFWD3
Beta-prop_NWD2_C
WD_LRWD1
Beta-prop_IFT122_2nd
AC_1
DUF2963
Motif
Other DBs
NCBI-GeneID:
102705629
NCBI-ProteinID:
XP_040380084
LinkDB
All DBs
Position
5:17944960..17948052
Genome browser
AA seq
320 aa
AA seq
DB search
MAATLSQLDDEIVRGMAIGAVFTDYAGKINCLDFHRKEDLLVTSGEDDSIRLYNITTATL
LKTTYHRKHGADRVCFTHHPSSILCSSRYNLESADSLRYLSLYDNRCLRYFKGHKDRVVS
LCMSPVNDSFMSGSLDHSVRIWDLRVNACQGILRLRGRPSVAYDQQGLVFAVAMEGGAIK
LFDSRSYDKGPFDTFLVGGDTAEVSDIKFSNDGKSMLLTTTNNHIYVLDAYGGDKRCGFS
LESSPNVATEAAFTPDGQYVISGSGDGTLHAWNINTIQEIACWNSHIGPITALKWAPRRA
MFATASTALTFWIPNKSSSN
NT seq
963 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgacgctgtcgcagctcgacgacgagatcgtccgcgggatggcaatcggcgcg
gtcttcaccgactacgctgggaagataaactgcctcgacttccaccgcaaggaggacctc
ctcgtcacctccggcgaggacgactccatacgcctctacaacatcaccaccgccacgctg
ttgaagactacatatcataggaaacatggtgctgatcgtgtctgttttacccaccatccg
agttccatcttatgttcttcaagatacaatctagagtcagcagattcacttcgttatcta
tcactgtatgacaaccgttgcttaagatattttaaaggacataaagacagggttgtttcg
ctatgcatgtcacctgtcaacgatagttttatgtcaggatcacttgatcacagtgtcagg
atatgggatcttcgtgtaaatgcttgtcagggtatactacgtttgcgcggtaggccttct
gttgcatatgatcagcagggccttgtttttgccgtagcaatggagggaggtgctattaag
ctatttgattcccggtcatatgacaaaggtccgtttgacactttcttggttggtggagat
acagctgaagtttctgacatcaaatttagcaatgacggaaagtccatgcttttgacaaca
accaacaaccatatatatgttctggatgcatatggaggggataagaggtgtggctttagt
ctggagtcatctcccaatgtagcaactgaagctgctttcactccagatggccaatatgta
atttcgggatctggtgatggtaccttgcatgcgtggaacatcaatacaatacaagagatt
gcttgttggaacagtcatatcgggcctatcactgctttgaagtgggctccccgtcgagca
atgtttgcaactgcgtcaactgccctaactttctggattcccaataagtccagttcgaat
tag
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integrated database retrieval system
