KEGG   Oryza brachyantha (malo sina): 102705943
Entry
102705943         CDS       T02995                                 
Name
(RefSeq) THO complex subunit 6 isoform X1
  KO
K13175  THO complex subunit 6
Organism
obr  Oryza brachyantha (malo sina)
Pathway
obr03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:obr00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    102705943
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:obr03019]
    102705943
   03041 Spliceosome [BR:obr03041]
    102705943
Messenger RNA biogenesis [BR:obr03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     102705943
Spliceosome [BR:obr03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    102705943
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_WDHD1_1st Beta-prop_EML_2 WD40_CDC20-Fz EIF3I WDR55 Beta-prop_TEP1_2nd Beta-prop_EML Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st Beta-prop_WDR90_POC16_2nd Beta-prop_IFT122_1st Beta-prop_IFT140_1st NBCH_WD40 Beta-prop_DCAF4 Beta-prop_Nup120_160 Hira Beta-prop_SPT8 v110
Other DBs
NCBI-GeneID: 102705943
NCBI-ProteinID: XP_015696531
LinkDB
Position
9:complement(7534557..7538176)
AA seq 379 aa
MDARGWDEAAYRRGILRERGLSCRTLFRAVFFDHQDDPDDPDVLLAAASSDGSLASFSLS
SCISSSSSAAAAPQFDWIQAPDAVSMVDPVCIVQAHSGPAYDVKFYPDSQQPLLFSGGDD
GRLRGWRWHEMQSCLVPLSLQGDHLEPVLDLVNPQHEGPWGARSPIPENNAIAINKQEGS
VYAAAGDACAYCWDVEIGKCKMTFKGHTDYLHSIAVREANRQVATGSEDGTARIWDCRSG
KCTQVIRPLKNKAFEGSWISCVAIDASESWLACGTSSGISVWSLLSNECIFNVDCHAPVQ
DLLFDKNQILAVGAEPLLSRFSINGTLLSQIKCAPQSAFSVSIHSSGMAAVAGYGGLVDV
ISQYGSHLCTFGCRSLDKY
NT seq 1140 nt   +upstreamnt  +downstreamnt
atggacgcgcgcgggtgggacgaggcggcgtacaggcgcggcatcctgcgggagcggggc
ctctcctgccgcaccctcttccgcgccgtcttcttcgaccaccaggacgacccggacgac
cccgacgtcctcctcgccgccgcctccagcgacggctccctcgcctccttctccctctcc
tcttgcatctcctcctcctcctccgccgccgccgctccccagttcgattggattcaggct
ccggatgccgtctccatggttgatcccgtctgcatcgtccaagcgcatagtggcccggcg
tacgacgtcaagttctacccggattcgcagcagccgttgctcttcagcggcggggatgac
gggcgcctccggggctggagatggcacgagatgcagagctgcctagtgccgctatctttg
caaggggatcatttggaaccagtacttgatttggtgaaccctcagcatgagggtccttgg
ggtgctcggtcaccaatacctgaaaataatgccattgccattaacaaacaggaaggatct
gtttatgcagcagccggtgatgcatgtgcttattgctgggatgtggagatcggtaaatgt
aaaatgaccttcaagggacatactgactatttgcacagcattgcagtccgtgaggcaaac
cgccaggtagctacaggatcagaggatggcacagcccgtatctgggattgcagaagcgga
aagtgcactcaggtgatacgcccattgaaaaataaggcttttgaggggtcatggatcagt
tgtgttgccattgatgcaagcgaaagctggctggcctgtggtacttctagtggtatatca
gtttggagccttctttcaaatgagtgcatctttaatgtggattgccatgctcctgttcaa
gatttactgtttgataaaaaccaaatcttagctgtcggtgctgaacctctgctctctcgt
ttctctatcaatgggactcttctctcacaaataaagtgtgctccgcagtcagcattctct
gtctccatccattcttcagggatggcagctgttgctggatatggaggcctggtggatgta
atatcccaatatgggagccatttgtgcacttttggctgccggagcctggacaaatattga

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