KEGG   Oryza brachyantha (malo sina): 102706282
Entry
102706282         CDS       T02995                                 
Name
(RefSeq) endoribonuclease Dicer homolog 4
  KO
K11592  endoribonuclease Dicer [EC:3.1.26.-]
Organism
obr  Oryza brachyantha (malo sina)
Brite
KEGG Orthology (KO) [BR:obr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:obr03036]
    102706282
Chromosome and associated proteins [BR:obr03036]
 Eukaryotic type
  Gene silencing
   RISC (RNA-induced silencing complex)
    102706282
   microRNA pathway
    RISC loading complex
     102706282
SSDB
Motif
Pfam: Ribonuclease_3 Ribonucleas_3_3 Dicer_dimer DEAD DND1_DSRM Helicase_C ResIII dsrm PAZ Cas3-like_C_2 Dicer_dsRBD SLFN-g3_helicase
Other DBs
NCBI-GeneID: 102706282
NCBI-ProteinID: XP_006653591
UniProt: J3LZG8
LinkDB
Position
4:complement(14055965..14073648)
AA seq 1633 aa
MGDDAAPAAAAAGPTTAGEPKDPRTIARKYQLDLCKRAVEENIIVYLGTGCGKTHIAVLL
IYELGHLIRKPSREVCIFLAPTIPLVRQQAMVIASSTDFKVQHYYGNGKSSRDHQEWEND
MRKYEVLVMTPQILLHSLRHCFIKMNSIALLIFDECHHAQAQKRHPYAQIMKEFYNSNSV
ERLPRVFGMTASPIIGKGGSNKLNYTKCINSLEELLHAKVCSVDNEELESVVASPAMEVY
FYGPVNHSNLTVAYSKELDSLKLQSERMLRDSLCDFKDSQKKLKSLWRLHENLIFSLQEL
GSFGALQAARTLLSFDGDKLDKREVDLNGNSSSFAHYYLSGATSILSRSITDGSHAGSFD
IETFEEPFFSDKFSVLINVLSRYRLQENMKCIVFVKRITVARAISNILQSLKCLDFWKCE
FLVGCHSGLKNMSRNKMDAIVERFSSGEVNLLVATSVGEEGLDIQTCCLVVRFDLPETVA
SFIQSRGRARMTKSKYVVLLERGNQSHEKLLNGYIDGECIMNEEIDSRTSNDIFDCLAEN
IYRVDSTGASISTACSVSLLHRYCDNLPRDMFFTPSPAFFYIDGIDGIICRLILPPNASF
RQVDGQPCLSKDEAKRDACLKACIKLHKLGALTDFLLPGPGSRKNKVSTTNNSSNNKVED
ESLREELHQMLIPAVLKPSRLKLDCLLSLHFYYVKFIPIPEDRRYQMFGLFVINPLPVEA
ETLQVDLHLARGRIVKAGIKHLGKIAFEKEKMMLAQKFQEMFLKILLDRSEFTSSHVILG
NDVTLEINSTFYLLLPIKQKCYGDKFMIDWPAVERCLSSPIFKAPKDVSVHDSYSPNKSL
RLLDGICSKTDVVGSVVFSPHNNIFFFVDAILDEINARSEYKDATYAEHFKERFGIELSQ
PEQPLLKAKQLFNLRNLLHNRLQETTESEGRELTEHFVELPPELCSLKVIGFSKDMGSSL
SLLPSLMYRLENLLVAIELKDVMSSSFPEASKISASGILEAITTEKCLERISLERFEVLG
DAFLKYVVGRHNFITYEGLDEGQLTRRRSDVVNNSNLYDLSIRRNLQVYIRDQQFEPIQF
FAPGRPCKVVCNSDVEVSLHQMNIHPDNRENCNMRCTKSHHWLHRKVIADVVESLIGVFL
VEGGFKAAFAFMHWMGIDADFNSSALYRVLDASSINLSLLDYTDIAELEELIDYKFKHKG
LLLQAFVHPSFSQHSGGCYQRLEFLGDAVLEYVITSYLYSTYPNLKPGQITDLRSLAVGN
DSLAYASVQKSIHRHLIKDSNHLTSAISRFEKYVKLSNSEKDLLEEPACPKVLGDIVESC
IGAVLLDSGFNLNNVWRVMLMLLKPVLTFSNMHTNPMRELRELCQCNGFELGLPKPVKAD
GEFHVRVEVNIKSKVIICTAANRNSKAARKFAAQETLSKLKSYGYKHRNKSLEEILVVAR
KRESELIGYNEDPIDVESDISVKIKSLHIHEERDANISFENTETSCTGSSKILSQRRAGH
IRPDNYDVDNGRNNQPKLAMQSGCLPSEATETSNKKVYHGDMVHKTARSFLFELCAANYW
KPPEFKLCKEEGPSHLPKFTYKVVVEIKGTSATLLECHSDAKHQKKAAQEHAAQGAVWCL
KQLGHLPKEGVRV
NT seq 4902 nt   +upstreamnt  +downstreamnt
atgggcgacgacgccgccccggccgcggcggcggcggggccgaccacggcgggggagccg
aaggatccgaggacgatcgcgcgcaagtatcagttggatctctgcaagagggctgtggag
gaaaacatcatagtgtaccttggaacaggatgtggtaagacacacattgccgtgctgctg
atatacgagcttggtcacctcatccgcaagccaagccgtgaggtctgcatcttcctcgcc
ccaactatcccccttgtacgccagcaagctatggtgattgcaagttccactgatttcaaa
gttcaacattattatgggaatggtaaaagctcgagagatcatcaggaatgggagaatgac
atgagaaagtatgaggtccttgtaatgacccctcaaatcttattgcatagtttgcgtcat
tgtttcatcaagatgaactctattgcacttttgatatttgatgagtgccatcacgcacaa
gctcaaaaacgacatccatatgcacaaatcatgaaggaattctacaatagtaatagtgtt
gagagattacctcgggtttttggcatgactgcttcaccaattattgggaaaggtgggtct
aataaacttaattacacgaaatgtataaacagtcttgaggaattacttcacgcaaaggtt
tgttcagttgataatgaagaacttgaaagtgtggttgcgtctcctgctatggaggtgtac
ttttatggcccagttaatcactctaatcttactgtagcatacagcaaagagcttgatagc
ttaaagcttcagagcgagcgcatgctgagagatagcctatgcgatttcaaggattctcaa
aagaaactgaagtccttatggaggttgcatgaaaatcttatttttagtttgcaagaactt
ggttcttttggagctctgcaagctgcaaggaccttgctgtcctttgatggtgataagcta
gacaaaagggaggttgatcttaacggcaattcttccagctttgcacattactacctgagc
ggagcaacttctattcttagtcgcagtataacggatggttcccatgctggttcatttgac
atagagacatttgaagaacctttcttctcagataaattttctgttcttattaatgttctt
tcaagatacaggttacaggaaaacatgaaatgcattgtttttgtgaaaagaataactgtt
gcaagagcaatatcaaacattctccaaagcttgaagtgtcttgatttttggaaatgcgag
ttccttgtgggttgccactcaggattgaagaatatgtcaaggaataagatggatgctatt
gttgaaaggttttcttctggcgaggtgaatcttttggttgctacgagcgtaggtgaagag
ggacttgatatccagacgtgttgccttgttgtgcggtttgatcttccagaaacagttgct
agttttatccagtcaagggggcgtgcccggatgactaaatctaaatacgttgttctccta
gagaggggaaatcagtctcacgagaagttgcttaatggttatattgatggtgaatgcatt
atgaatgaagagattgactcaagaacttcaaatgatatatttgattgcctcgcagagaac
atttatcgagtggatagcactggtgcctccattagcactgcttgtagtgtatctctactg
catcgctactgcgacaaccttcctagggatatgttttttacaccttccccagcgttcttc
tacattgatggcattgacggaataatctgcagactaatacttccaccaaatgcttctttc
cgtcaagtggatggtcaaccatgtctatcaaaagatgaagctaagagagatgcatgcttg
aaggcatgcataaaacttcataaactgggtgctttgacagattttcttctaccaggtcca
ggttcaagaaagaataaagtatcaacaacaaataattcatcaaacaacaaagttgaagat
gaaagtctaagagaagagcttcatcagatgttaattcctgcagttctcaaaccttcaaga
ttgaagctagactgtttattgagcttgcacttctactatgttaaatttattcccatacca
gaagataggcgctaccagatgtttggcctctttgtgatcaacccccttcctgtggaagct
gaaacattacaagttgacttgcatcttgctcgtggcaggattgtgaaagcaggaattaag
catttggggaaaatagcgtttgagaaagaaaagatgatgcttgcacagaagtttcaagag
atgtttctgaagattctcctggacagatctgagttcacttcatcccatgttatattgggc
aatgatgttacattagaaattaattcaacattttacttgctgcttcccatcaagcagaaa
tgttatggcgataaatttatgattgactggccagcagttgagcgctgtttatcatcacca
atctttaaagcccctaaagatgtgtctgtccatgactcatattcaccaaataagtctctg
agacttcttgatggaatctgtagtaaaactgatgtggttggcagtgtagtatttagtccc
cacaacaacatctttttctttgttgatgccattctggatgaaataaatgctagaagcgag
tacaaggacgcaacttatgcagaacacttcaaggaaaggtttggtattgaactatcccag
cctgaacagccacttttgaaggctaaacagctcttcaacctgcgaaatttgcttcacaat
cggttacaggagaccacagaatcggagggtcgtgaattaacagaacacttcgtggagtta
cctccagaattatgttccttgaaggttattgggttttcaaaagatatgggcagttccctg
tccttactgccatctttaatgtatcgtttggagaatttgctggtggctattgagttgaag
gatgtgatgtcttcttcttttccagaagcttctaaaattagtgcttctggtatacttgaa
gcaattactactgagaaatgtttggagaggatctctttggagcggtttgaagtcctaggt
gatgctttcttgaagtatgtagttgggcgtcacaattttattacatatgaaggacttgat
gaagggcagttgaccaggagacgttctgatgtagtgaataattcaaatttatatgacttg
tcaatcagaagaaatttgcaggtatacatacgggaccaacagtttgaaccaattcagttc
tttgcaccaggaagaccttgtaaagttgtatgcaatagtgacgtggaagtgagtctacac
cagatgaatattcaccctgataatagagaaaactgtaacatgagatgtacaaagtcgcat
cattggctgcacagaaaagtgattgcagatgttgttgaatcacttattggagtatttctt
gttgagggtggattcaaagctgcatttgctttcatgcattggatgggaatagatgctgat
tttaatagttcggctctctacagagtgttagatgcaagctccatcaatttatctcttttg
gactacactgacattgccgagcttgaagaattgatagattacaagttcaaacataagggt
ctccttctccaagcattcgtacacccttcgtttagtcagcattctggaggctgctaccag
agactggagtttcttggagatgctgttttggagtatgtgataacatcatacctctactca
acttatcccaatctaaagcctggtcaaataacagatctaagatcattagctgttggtaat
gattcacttgcttatgcatcagttcaaaaatctatccataggcatcttataaaggattca
aatcatcttacgtcagcaataagtagatttgagaaatatgtgaagctctccaattcagag
aaagacttgcttgaagaaccagcatgtcccaaggttcttggtgatattgttgaatcttgt
attggcgcggtgcttttagattcaggcttcaacctgaacaatgtttggagagtaatgctt
atgcttctaaagccagtattgactttctccaacatgcatactaatccaatgagagaactt
agagagctttgtcagtgtaatggatttgagttaggccttcccaaacctgtgaaggctgat
ggagagttccatgtgagagtagaagttaacatcaagagcaaagtgatcatttgtactgca
gccaatcgaaattccaaagccgctagaaagtttgctgcacaagaaacactctctaaactc
aagagttatggatataaacatagaaacaagtcactcgaggagattttggttgttgctagg
aagagagaatcagaactcatagggtataatgaagatccaatcgatgttgagtctgacata
tctgtaaaaataaagagtctacatatacatgaagagagggatgcaaacatatcttttgaa
aatacagaaacatcttgtactgggagttctaaaattctcagtcaaagaagagcaggacat
atcaggcctgacaattatgatgttgataatggaaggaacaatcaacccaagttggcaatg
cagagtggctgtctgcctagtgaagcaacagagacaagcaataaaaaggtctatcatggt
gatatggtacacaagactgcaagatcattcctttttgaactatgtgctgcaaattattgg
aaacctcctgaattcaagttatgtaaagaggaaggcccaagccatcttccaaagttcaca
tacaaggtggtcgttgagataaagggcacttcggcgacccttttggagtgtcacagcgat
gccaagcatcagaagaaggctgcacaagagcatgcggcacaaggggcggtttggtgtctc
aagcaacttgggcacctaccaaaagagggcgttcgtgtgtaa

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