Oryza brachyantha (malo sina): 102706506
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Entry
102706506 CDS
T02995
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3-like
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
obr
Oryza brachyantha (malo sina)
Pathway
obr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
obr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102706506
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
obr03019
]
102706506
03012 Translation factors [BR:
obr03012
]
102706506
Enzymes [BR:
obr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
102706506
Messenger RNA biogenesis [BR:
obr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
102706506
Translation factors [BR:
obr03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
102706506
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
nSTAND3
AAA_16
AAA_19
T2SSE
ATPase
PhoH
Motif
Other DBs
NCBI-GeneID:
102706506
NCBI-ProteinID:
XP_015698231
LinkDB
All DBs
Position
1:706869..716883
Genome browser
AA seq
1246 aa
AA seq
DB search
MLLASCLRGRLRLLRRPRPLIMPSPLFLSRNPNPSPGNATATGPVLLSPPSTSAAPMSTS
GVYVPPMRRLRSVIASTNGSLAPPPSAAAQAQPVRSTPEWRADGRSLSPPPSPPRPPRRA
TPPPPRQPPPQPEPFRQRSAWYSRYAYDDFSEDDSDREMDRTSVSSKGGSTLDNVDEWKW
KLHMLLRNEDEQEVISRERKDRRDFEQLSQLAERMGLYSRQYSRIVVFSKVPLPNYRSDL
DDKRPQREVSIPSGLQREVDALLSDYLARKRTSSGSFPNAAFSRSSSTDSFATDENFLEQ
QDNQTSTSAVIERIQRRKSLQLRNQQEAWQESYDGQSMMEFRRSLPSYKERQTLLDAISR
NQVVVVSGETGCGKTTQLPQYILESEIDAARGATCSIICTQPRRISAIAVSERVAAERGE
KIGESVGYKVRLEGMRGRDTRLLFCTTGVLLRRLLVDRNLKGVTHVIVDEIHERGMNEDF
LLIVLKDLLPRRPELRLVLMSATLNAELFSSYFGGAPMIHIPGFTYPVRTHFLEDILEVT
GHRLTPYNQIDDYGQEKSWKMQKQALRKRKSQIASVVEDSVQAADLRDYSSRTRDSLSCW
NPDSIGFNLIENVLCHICQKERAGAVLVFMTGWDDINALKEQLQANPLLGDPNKVLLLAC
HGSMASSEQKLIFDRPEPGVRKIVLATNLAETSITINDVVFVVDCGKAKETSYDALNNTP
CLLPTWISKASARQRRGRAGRVQPGECYHLYPRCVYEAFADYQLPELLRTPLQSLCLQIK
SLRLGSISEFLSRALQSPESLSVENAIEYLKVIGAFDHNEELTILGKHLSMLPVEPKLGK
MLIFGAIFNCLDPVLTIVSGLSVRDPFLTPFDKKDLAESAKLQFSCRDYSDHLALVRAYE
GWREAERDRNGYDYCWKNFLSVQTLKAIDSLRRQFLFLLRDTGLVDENMTLCNKWSRDEN
LVRAVICAGLYPGVSSVVNKEKSISLKTMEDGQVMLYSSSVNGKEAKIPFPWLVFNEKVK
VNSVFLRDSTAISDSILLLFGGNIKQGGLDGHLKMLGGYLEFFMSRDLASTYLSLKSELD
NLIHCKLQNPRMDIQTSEELLSAIRLLVTEDPCSGRFVYGRQEQRSKKAKTMLSAAPMVH
GGGNGGDNAKNQLQTLLTRAGHDNPSYKTKQIKNSLFRSTVEFNGMQFVGQPCANKKLAE
KDAAGEALSWLTGGAPSDSRDHQDMDHMSMLQKPPRRKRHHHHRRS
NT seq
3741 nt
NT seq
+upstream
nt +downstream
nt
atgctcctggcctcctgcctgcggggccgcctccgcctcctccgccggccacgcccgctg
atcatgccctccccgctcttcctctcccggaaccctaatccttctcccgggaacgcgact
gccactggtccagtcctcctctccccgccctccacctccgccgcgcccatgagcaccagc
ggggtctacgtgccgccgatgcggcgcctccgctccgtcatagcgtccaccaacggcagc
ctcgcgccgccgccgtccgcagcggcgcaggcccagccggtgcgcagcacgcccgagtgg
cgggcggacgggcgctcgctcagcccaccgccgtctccgcctcgaccgccccggcgtgcg
acgcctcccccgccgcggcagcctcctccgcagccagagcctttccggcagcgaagcgct
tggtactcccggtacgcgtacgatgatttctccgaggatgactcggatcgggagatggat
cgcacctctgtctcgagcaagggtgggtccactttagataatgttgatgaatggaaatgg
aaactgcacatgcttcttcgtaatgaagatgagcaagaggttatctctagggaaagaaag
gacagacgcgattttgaacaactttcccaactggccgaacgcatgggtttgtacagccgt
cagtattctaggattgttgtgtttagtaaggttccgttgcctaattatagatcagacctc
gatgacaaaagacctcaaagagaggtatctataccttctggcttgcaaagagaagttgat
gctctgctttcagattatcttgcacggaagagaacaagcagtgggagctttcctaatgct
gccttttcaaggtcaagtagcacagacagttttgcaactgacgagaacttcttggagcag
caagataatcagacttcaacaagtgccgtgatagagagaatacaaaggaggaaaagccta
cagttgcgtaatcaacaggaagcttggcaggaatcatatgacggccaaagcatgatggaa
tttcgtcgcagtcttccttcttataaagaaaggcaaacattattggatgccatatctcgg
aatcaggttgttgtagtttcaggtgaaacaggatgtggtaagacaacacagctacctcaa
tacattttagagtctgaaatagatgctgctcgtggtgccacttgtagtattatttgcact
caaccgagacgaatatcagctattgctgtttctgaaagagttgctgctgaaagaggggag
aaaattggtgaatcggttggctacaaagttcggttggaaggaatgagagggcgggacaca
cgccttcttttctgtactactggtgttctgttgcggagattgctggtggatagaaatttg
aaaggtgttacccatgttattgttgatgaaatccatgagcgtggcatgaatgaagatttt
cttcttattgtactgaaggaccttcttccacgccggcctgagctaagacttgttttgatg
agtgcaacccttaatgctgagctattctcttcatactttgggggagcaccaatgatacac
atacctggttttacatatcctgttcggactcattttctagaagatattctcgaagttact
gggcacagattaactccgtacaatcaaattgatgactatggtcaagagaagagttggaag
atgcaaaagcaagctctaaggaagaggaagagccaaattgcttctgttgtagaagattca
gttcaagctgctgatttaagggactatagttcacgaactcgtgactcactatcctgttgg
aatcctgattcaattggttttaacttgatagaaaatgtcttatgccatatctgtcaaaag
gaaagagctggtgctgttcttgtatttatgactgggtgggatgacatcaatgcgctgaaa
gagcagctgcaagcaaacccattgcttggagaccctaataaagttttactgcttgcatgt
catggttcaatggctagctcagagcagaaactaatattcgatagacctgagcctggcgta
aggaaaatagttcttgctaccaatttggctgaaactagtattactatcaatgatgtagtt
tttgttgttgattgtggcaaagcaaaagagacatcttatgatgcactgaacaatacccca
tgtttgcttccaacctggatctccaaggcttctgccagacagagacgaggcagagctggt
cgagtccaaccaggggagtgttaccatctctatccacgatgcgtgtatgaagcatttgct
gattatcagttgccagaactcctgagaactccccttcaatccctctgtttgcaaataaaa
agtttgcgtcttgggagcatatctgaatttttatccagagctttgcagtcacctgagtct
ctatcggtagaaaacgccattgaatatctcaaggtcattggagcgtttgatcataatgaa
gagttaaccattctaggaaagcacttatccatgctcccggtcgagcctaaattggggaag
atgcttatctttggtgctatttttaattgccttgatcccgtcttaaccattgtttcggga
cttagtgtgagagatccattcttgactccatttgacaagaaggatcttgcggagtctgct
aaattgcagttttcatgccgggactacagcgatcaccttgcgcttgttcgtgcatatgaa
ggatggagagaagctgaaagagatcgcaatggctatgactactgctggaaaaattttcta
tctgtgcaaaccttgaaagccatagattcccttcggagacaatttctctttcttctcagg
gatactgggttggttgatgaaaatatgactttgtgcaataaatggagccgtgatgaaaat
ctagttcgggcggtcatttgtgcaggactatatccaggtgtttcctctgttgtgaacaag
gagaaatcaatttctctcaagacaatggaggacgggcaagtcatgctttactcgagttca
gtcaatggaaaagaagctaagattccgttcccctggctggtgttcaatgagaaggtgaag
gtgaattctgtttttctcagggactcaacagctatatctgattctatactgttgctcttt
ggaggcaacataaaacaagggggcttggatggacatttgaaaatgcttggaggatatctt
gagttcttcatgagtcgtgatcttgcatcgacttacttgagtctaaagagtgaacttgat
aatttaatccattgcaagctccaaaacccaaggatggacatccaaaccagtgaggagctt
ctgtcagctattcgactgcttgtcaccgaggatccatgcagtggtcgttttgtgtatggt
cgacaagagcaaagatcaaagaaagcaaagacaatgctctctgcagcccccatggttcat
ggtggtggaaatggaggagacaacgcgaagaaccagcttcagacccttctcactagggcc
gggcatgacaacccgtcctacaaaacgaagcaaatcaagaacagcctcttcaggtcgaca
gtggagtttaatggcatgcagtttgtagggcagccgtgcgccaataagaagcttgcagag
aaggatgctgcaggagaggcattgagctggctgacaggaggagctccctccgactcaaga
gaccaccaagacatggatcatatgtccatgctgcagaaaccaccacgcaggaagaggcat
catcatcataggaggagttga
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integrated database retrieval system
