Oryza brachyantha (malo sina): 102707157
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Entry
102707157 CDS
T02995
Name
(RefSeq) probable pectate lyase 5
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
obr
Oryza brachyantha (malo sina)
Pathway
obr00040
Pentose and glucuronate interconversions
obr01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
obr00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
102707157
Enzymes [BR:
obr01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
102707157
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
102707157
NCBI-ProteinID:
XP_015697236
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Position
10:complement(11154520..11159373)
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AA seq
465 aa
AA seq
DB search
MRWCSRRQIWDLFSRCGGGNVGLLRSKVATSRRRMQEAGGGGGGCMTGNPIDDCWRCAGT
DWRQDRQRLAECGIGFGRNAMGGKGGPVYVVTDSSDRDAVNPAPGTLRYGAIQEGPLWIV
FAGDMTIRLNEELLVNSYKTIDGRGANVHIAGGACITLQYVSNVIIHNLHVHDCVPAGNA
NVRASPTHYGYRTRSDGDGISLYSARDVWVDHCALSRCADGLIDAIMGSTAITVSNSYFS
HHNEVMLLGHSDDYLPDSGMQVTIAFNHFGIQLVQRMPRCRRGYFHIVNNDYTAWEMYAI
GGSASPTINSQGNRYIAPADPNAKEVTKRVDTEEGQWAGWNWRTEGDMMVNGAFFVPSGE
GLEAIYDKASSTDPKSSALVDQLTAGAGVLGGPRDNGEAAAYAGVNYAGMGAGSSGGGGG
DGGLGYGYLGMVYGSGGDWSCRAELTLQLTSLFIALVALICLHPL
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
atgcggtggtgttcccgccggcaaatttgggatcttttttcgaggtgcggtggtggtaat
gtggggttattgcgcagcaaggtggcgacgtcgaggaggcggatgcaggaggccggcggc
ggcggcggggggtgtatgacggggaaccccatcgacgactgctggcggtgtgccgggacg
gactggaggcaggaccggcagcggctggcggagtgcggcatcgggttcgggcgcaacgcc
atgggcgggaagggcgggccggtgtacgtggtgaccgactcctccgaccgcgacgcggtg
aacccggcgccggggacgctccggtacggcgccatccaggaggggcccctctggatcgtc
ttcgccggcgacatgaccattcgcctcaacgaggagctcctcgtgaacagctacaagacg
atcgacgggcgcggcgccaacgtccacatcgccggcggcgcctgcatcacgctgcagtac
gtctccaacgtcatcatccacaacctccacgtccacgactgcgtccccgcgggcaacgcc
aacgtgcgcgcctcgccgacgcactacggctaccgcacccgctccgacggcgacggcatc
tcgctctactccgcgcgcgacgtgtgggtcgaccactgcgcgctctcccgctgcgccgac
ggcctcatcgacgccatcatgggctccaccgccatcaccgtctccaacagctacttctcc
caccacaacgaggtcatgctgctcggccacagcgacgactacctcccggactccgggatg
caggtcaccatcgccttcaaccacttcggcatccagctcgtccagcggatgccccgctgc
cggcgaggctacttccacatcgtcaacaacgactacacggcgtgggagatgtacgccatc
ggcggcagcgccagccccaccatcaacagccagggcaaccgctacatcgcccccgccgac
cccaacgccaaggaggtgacgaagagggtggacacggaggaggggcagtgggcggggtgg
aactggaggacggagggggacatgatggtgaacggcgccttcttcgtcccctccggcgag
ggcctcgaggccatctacgacaaggcctccagcaccgaccccaagtcgtcggcgctcgtc
gaccagctcaccgccggcgccggcgtcctcggcggccccagggacaacggcgaggcggcg
gcgtacgccggcgtgaactacgccggaatgggagccggcagcagcggcggcggcggtggc
gacggcgggctgggatacggctacctcgggatggtgtacggcagcggcggcgattggagc
tgccgggctgagctgacactgcagctgacctcattgtttattgcactcgttgctctcata
tgcttgcacccattgtga
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