Oryza brachyantha (malo sina): 102707494
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Entry
102707494 CDS
T02995
Name
(RefSeq) serine/arginine-rich splicing factor SR45-like
KO
K14325
RNA-binding protein with serine-rich domain 1
Organism
obr
Oryza brachyantha (malo sina)
Pathway
obr03013
Nucleocytoplasmic transport
obr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
obr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
102707494
03015 mRNA surveillance pathway
102707494
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
obr03019
]
102707494
Messenger RNA biogenesis [BR:
obr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
102707494
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
Nup35_RRM_2
RRM_PARP14_3
RRM_5
RRM_3
RAP1
Motif
Other DBs
NCBI-GeneID:
102707494
NCBI-ProteinID:
XP_015692771
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All DBs
Position
5:258189..262608
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AA seq
385 aa
AA seq
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MATKSRRRSPSSSSSTSSGSYSRSPASASSSSSPSRSRSPPHPTRRSSAARRGRSPSPPP
PPARKASPAPESTVLHVDHLSRNVNEDHLKEIFENYGEVVNVELSMDRVVNLPRGYGYVE
FKKRADAEKALLYLDGGQIDGNVVKVRFALAPQQIAVASPKAHRSSPKGNAVDYNKVGPS
AEKANRQRPREASPPRKPAPSPRRRSPPSRRVDSPRRRPDSPPIRRRPDPSPIRRGGTSP
NRRPLSPIRRRSPSPPPRRLRSPRHLSPRRDRGSPIRRRSPFPRRRLTPTRRMWNPPRRP
LPLNHRSRSPIRRPIRSPSRSISPRRGRGPPMRRGRSSSYSDSPTPPRRGPRRVLRSRSP
RRPIRGRSASSYSHSSSSSASPIRN
NT seq
1158 nt
NT seq
+upstream
nt +downstream
nt
atggcgaccaagtcccgccgccgctccccgtcgtcctcctcctccacctcctctggctca
tactcgcgctcccctgcatcggcctcctcctcctcctcgccgtcgcgcagccgctcccct
ccgcaccccacgcgccgctcatctgctgcgcggaggggacgctcgccttcgccgccgccg
ccgcctgccaggaaagcgtctccggcccctgagtcgaccgtcctccacgttgaccatctg
tccaggaacgtcaatgaggatcatctcaaggagatctttgaaaattatggtgaagtcgtc
aatgtggagctctccatggatagggtggtcaatctcccccgtgggtatggatatgttgag
ttcaagaagagagctgatgcagagaaggctcttctttacttggatggtggccaaattgat
ggcaatgttgttaaagtcagattcgcacttgcaccacagcaaatagctgttgcttctcca
aaggctcatcggtcatcaccaaaagggaatgcggttgattataataaagttggtcctagt
gctgaaaaggccaacagacagcggccgagggaagcatctcctccaagaaagccagctcca
tctccaagaaggcgatctcctccaagtcgaagagttgactcacctaggcgcaggcctgat
tctcctccaattcgccgccgaccagatccctctcctatcaggcgtggcggaacatctcct
aacaggagaccattatccccaattagaagacgttcgccctctccacctcctcgaagacta
agatcaccaaggcacctatctccaagaagggatcggggcagtccaatccgcagacgttct
ccatttcctcgtagaaggctgactcctacaaggaggatgtggaaccctcccagaagacca
ctaccacttaaccatcgcagtagatctcctattcgccgaccgattcgctctccttccaga
tcgatttctccacgcaggggtcgagggcctcctatgcgtcgtgggcggtcatcatcatac
tctgattcacccactcctccaagaaggggaccaagaagggtgctcagaagccgcagtcct
agaaggcctataagaggaagaagtgcctctagctacagccatagtagcagcagctcggcc
tcccctatccgcaattag
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