Oryza brachyantha (malo sina): 102707933
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Entry
102707933 CDS
T02995
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A
KO
K07466
replication factor A1
Organism
obr
Oryza brachyantha (malo sina)
Pathway
obr03030
DNA replication
obr03420
Nucleotide excision repair
obr03430
Mismatch repair
obr03440
Homologous recombination
obr03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
obr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
102707933
03420 Nucleotide excision repair
102707933
03430 Mismatch repair
102707933
03440 Homologous recombination
102707933
03460 Fanconi anemia pathway
102707933
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
obr03000
]
102707933
03032 DNA replication proteins [BR:
obr03032
]
102707933
03400 DNA repair and recombination proteins [BR:
obr03400
]
102707933
Transcription factors [BR:
obr03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
102707933
DNA replication proteins [BR:
obr03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
102707933
DNA repair and recombination proteins [BR:
obr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
102707933
MMR (mismatch excision repair)
102707933
DSBR (double strand breaks repair)
HR (homologous recombination)
102707933
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
OB_MEIOB_N
CDC24_OB3
DUF223
Motif
Other DBs
NCBI-GeneID:
102707933
NCBI-ProteinID:
XP_006647995
UniProt:
J3LHL9
LinkDB
All DBs
Position
2:complement(25022491..25025891)
Genome browser
AA seq
653 aa
AA seq
DB search
MLTPNGVVAALAGDTNLKPVVQIVELRGVNVNGAGVTRGERFRAVVSDGTTTSSALFAAQ
LSDRARSGALRRGSIVQLSEYVINDVGPRRIIVILNLEVLIEECEIIGSPTTLSETGFPN
SNPMRVEQFNGAPQYGLMAGNSPNTTARPTDNGPVFQRSMTGNSSNFATRPNDNKVPVFQ
PTVQPAYRPAPNYKNHGSIMKNEAPARIIPISALNPYQGRWAIKARVTAKGDIRRYHNAK
GDGKVFSFDLLDSDGGEIRVTCFNALLDRFYKVVEVGKVYVVSRGNLRPAQKNYNHLNSE
WEIVLENGSTVELCPDEDSSIPTQRFDFRPINEIEDAQNNAILDIIGVVTSVNPCTTIQR
KNGMETQKRTMNLKDMSGRSVEVTMWGDFCNREGSHLQEMVERGTFPVLAIKAGKVSDFS
GKSVSTISSTQLFINPDSAEAHRLRQWFDGGGRDASTQSISRDITPASSRNEIRKTVAQI
KDDGLGMGDKPDWITVKATVISFKNDNFCYTACPNMIGDRQCNKKVTKGTTGNWTCDKCD
REFQECDYRYLMQLQIQDHTGTTSVTAFQEAGQELLGCSARELYTLKEREDPRFADTMLD
CLFQDYLLRLKVKEESYGDERRVKITVAKVEKVDPSGESKFLLDLISRSSALH
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
atgctgacgccgaacggcgtggtggcggcgctggcgggggacaccaacctcaagccggtg
gtgcagatcgtggagctgcggggcgtcaacgtcaacggagcgggggtcacgcggggcgag
aggttcagggcggtggtgtccgacggcaccaccacgtcctccgcgctcttcgctgcgcag
ctcagcgaccgcgcgcggtccggcgcactccgccgcggcagcattgtgcagctctctgag
tacgtcatcaacgacgtcgggcccagaaggattattgtcattctgaacctggaagttctt
attgaggagtgtgagataattggaagtccgacaacgctttcagaaactggatttcctaac
tcaaatccgatgagagtagagcaatttaatggagcacctcaatatggtctgatggcaggg
aactcaccaaatacaactgcaaggcctactgacaacggtccagttttccaacgttcaatg
acaggaaactcctctaactttgccactaggccaaatgacaacaaagttccagtcttccaa
ccaacagtccagccagcctatcgccctgcacccaattacaaaaatcatggatcaatcatg
aaaaatgaagcccctgctagaataatccccatatctgctttaaatccttatcaaggccgc
tgggctatcaaggctagagttactgccaagggagatatccgccgataccataatgctaaa
ggtgatggcaaagtattctcttttgacttgcttgattccgatggaggtgagatccgggtg
acatgcttcaatgctcttcttgatcgattctacaaagttgtggaagttggtaaggtctat
gtggtatcaagaggaaacttgagacctgcacagaagaactataaccatcttaacagtgag
tgggagattgtattggagaatgggtcaactgtggaactttgtcctgatgaggacagttcc
attcccacccagcggttcgacttcagaccgatcaatgaaatcgaggatgcccagaacaat
gcgatccttgatatcataggtgttgttacatcggtcaacccttgcaccacaatacagagg
aaaaatgggatggaaactcagaaaagaactatgaacctgaaggatatgtctggtcgaagt
gttgaggtaaccatgtggggtgacttttgcaacagagaaggctcacacctgcaagaaatg
gttgagcgtgggacttttccggtgctggccatcaaagcaggaaaagtgagtgatttcagt
ggcaagtctgttagcacaatttcttcaactcagctcttcataaatcctgactctgctgaa
gctcataggctcaggcaatggtttgatggcggaggtagagatgcctctactcagtccatt
tccagggatatcacacctgcatcatcgaggaatgagatccgaaagacagttgcacagatc
aaggatgatggtcttggaatgggggacaaaccggactggatcacggtgaaagccaccgtt
atatccttcaagaacgacaacttctgctacacggcttgtcctaacatgattggcgacagg
cagtgcaataagaaggtgacgaagggtactactggcaattggacctgcgacaaatgcgat
agggagtttcaagagtgcgactacaggtatctcatgcagttgcagattcaagatcacacg
ggaacaacttcagtgacagcattccaggaggctgggcaggagttgcttggctgctcggca
cgagagctctacacactcaaggagcgcgaggaccctcgcttcgcagacaccatgctcgat
tgcttgtttcaggactatctgctcaggctgaaggtcaaagaagaatcatacggtgatgag
cgcagggtgaagattacggtcgccaaagtggagaaggttgatccttcaggtgaaagtaag
tttctgctcgatttaatttccaggtcctcggcgttacattag
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