Oryza brachyantha (malo sina): 102708177
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Entry
102708177 CDS
T02995
Name
(RefSeq) protein RDM16
KO
K12843
U4/U6 small nuclear ribonucleoprotein PRP3
Organism
obr
Oryza brachyantha (malo sina)
Pathway
obr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
obr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102708177
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
obr03041
]
102708177
Spliceosome [BR:
obr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
102708177
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
PRP3
Prp3_C
SabA_adhesion
Motif
Other DBs
NCBI-GeneID:
102708177
NCBI-ProteinID:
XP_040383549
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Position
9:complement(3424241..3428001)
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AA seq
836 aa
AA seq
DB search
MDRDRSSRRARDDDDRHHRSRDRDDHRRRHDTDADDHRHHKRDGGDDDDRRRRRHHHHDG
GGEEERRSRRHRHQRDGSRRSLSPSESPPHVKRERSSSRAPRDSVERRDLADQEHPPPSR
KRKGHEGGGNESDPEGGKRARASVEPPPPKEERRRRERRRFEDADANGKHGDDSSKGDKD
NSNHEKRKVELSLNGDSRSGLVPNAGVHQLLNGAPVVVPSSDPVPSKVSSITTTNENEGV
SIRSDEVTGKSSTDGSTTSAAGKSSNLSLDALAKAKKALQLKKELSEKLKKLPVLNNKLG
ATSADTQIPKNETQHVSSSSASGMSVGAASSLTDSSTSAMPATAGAVGIPGLANIPNLDA
VKRAQELAAKMGFRQDPQFAPLINLFPGTTSELTVPQRPAKAPVLRLDAQGREIDEHGNV
INKTKPTNLSTLKVNINKQKKEAFQIIKPDLDSLAKSSAHFDERMGINQNKLLRPRRPGF
QFIEEGKLSRQAELQRIKNQFGEAQAKELKVKQAQLAKAKAEVDMNPNLIEVAPGRPPKQ
KQKEEIPDIEPWDAKILLSPTYNDFSMEKVNMDKITIYVEHPEPFEPPAEPAPPPPQPLK
LTKKEQKKLRTQRRLAKEKDRQEMIRQGLLEPPKPKVKMSNLMKVLGAEATQDPTRMEME
IRTAAAEREQAHVDRNIARKLTPSERREKKERKLFDDPNTLETIVCVYRIRDLSHPQTRF
KVDVNAQENRLTGAVVITDGISVVVVEGGKKSIKRYNKLMLNRIDWATAVGGDDDAEEES
DKPVNSCALVWQGSVVKPSFTRFSVHNCRSEAAAKKVFADANVPHYWDLAVNFSED
NT seq
2511 nt
NT seq
+upstream
nt +downstream
nt
atggatcgcgaccgctcctcccgccgcgcccgcgatgacgacgaccgccaccaccgctcc
cgcgaccgcgacgaccatcgccgccgccacgacaccgacgccgacgaccaccgccaccac
aagcgcgacggtggtgatgacgacgaccgccgccgccgccgccaccaccaccacgacgga
ggcggtgaggaggagcgccggtcccgccgccaccgccaccagcgcgatggcagccgccgg
tccctgtccccgtccgagtccccgccccacgtgaagcgggagcggtcgtcgagccgcgct
cccagggactccgtcgagcgccgagacttggccgaccaagagcatccgccgccttcgcgg
aagcggaagggccacgagggcgggggcaacgaatccgaccctgaaggtgggaagcgggcg
agggcttccgtagagccgcccccgccaaaggaggagaggcggaggcgggagcgacggagg
tttgaggatgccgatgcaaatgggaagcatggcgatgatagtagtaaaggcgataaggat
aactcaaaccatgagaagaggaaagtggagctatcattaaacggagattcacggagtggt
ctggtgcccaatgctggtgttcaccaactgctcaatggtgcacctgttgtggtgccatca
tctgatcctgttccttcaaaggtatcttcgattactaccaccaatgaaaatgaaggagtt
agtattagatctgatgaggttactggaaaatctagtacagatggaagtacaacttcagcc
gctggcaaaagtagtaacctatctcttgatgctttagccaaagctaaaaaagcattgcaa
ctgaagaaggaattatcagaaaaactcaagaagttacctgtgcttaacaacaaacttggt
gctactagtgctgatacacaaattccaaagaacgaaacacagcatgtttctagctctagt
gcatcaggaatgtctgtaggtgcagcttccagtcttactgacagtagtacctctgcgatg
cctgctacagcaggtgcagttggtattccgggccttgctaacattcccaatttggatgct
gtaaagcgagcacaggagcttgctgctaagatgggattccgacaggacccacaattcgca
cctctcatcaatttgtttccaggtacaacctctgaactaactgtgcctcaaagacctgca
aaggcacctgttctccgtcttgatgctcagggtagggaaattgatgagcatgggaatgtt
atcaacaagaccaaaccaaccaatttgagtactctaaaggtcaacataaataagcaaaag
aaggaagctttccaaataatcaaacctgacttggattcccttgcaaaatcaagtgcgcat
tttgatgaaaggatgggcatcaaccaaaacaagcttctccgccctagaaggcctgggttt
cagtttattgaggaaggaaaactttcgaggcaggctgagctgcagagaattaagaatcaa
tttggtgaagcacaagctaaagaacttaaagtcaagcaagctcaacttgcaaaggcaaag
gcagaagttgacatgaacccaaacctgattgaagttgctcctggaaggcctccaaagcaa
aagcagaaggaagagattcctgacattgagccatgggatgcaaaaattttactttctcca
acatacaatgatttctccatggagaaggttaatatggacaaaatcactatatatgtagag
catccagagccattcgagccaccagctgagcctgcaccaccaccgcctcagccacttaag
ctgactaagaaagaacagaagaaactcagaacacaaagacgccttgctaaggagaaagac
aggcaagaaatgatcagacaaggcctcttggagccaccaaagcccaaggtcaagatgagc
aatcttatgaaagtacttggagctgaagctacacaggatccaacacgtatggagatggaa
atacgaactgctgctgcagagcgtgagcaggctcatgtagaccgcaacattgcccgcaag
ctcactccatcagagcgccgcgagaagaaagagaggaagctttttgatgatcctaacacc
ctagagaccatagtttgtgtgtacagaatcagagacctgtcacatccacaaacacgtttt
aaggttgatgtgaatgcacaagagaaccggctaactggtgctgtagtcataacagatggg
atcagtgttgttgttgttgagggagggaagaagtccatcaaaaggtacaataagctgatg
ctgaaccggattgactgggctactgcagttggtggtgatgatgatgctgaagaggaatca
gacaagccggtgaatagctgtgcattagtctggcagggtagtgtggtaaaacccagcttt
accagattcagtgtacacaattgccggagtgaggctgctgcgaagaaggtgtttgcagat
gctaatgttccacactactgggacctggctgttaacttctcagaagattga
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