Oryza brachyantha (malo sina): 102708189
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Entry
102708189 CDS
T02995
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15-like
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
obr
Oryza brachyantha (malo sina)
Pathway
obr03013
Nucleocytoplasmic transport
obr03015
mRNA surveillance pathway
obr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
obr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102708189
09122 Translation
03013 Nucleocytoplasmic transport
102708189
03015 mRNA surveillance pathway
102708189
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
obr03019
]
102708189
03041 Spliceosome [BR:
obr03041
]
102708189
Enzymes [BR:
obr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
102708189
Messenger RNA biogenesis [BR:
obr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
102708189
Spliceosome [BR:
obr03041
]
Complex C
Other components
EJC/TREX
102708189
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
102708189
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
DNA_repr_REX1B
Motif
Other DBs
NCBI-GeneID:
102708189
NCBI-ProteinID:
XP_006644281
UniProt:
J3L0Y6
LinkDB
All DBs
Position
1:15538293..15543381
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AA seq
433 aa
AA seq
DB search
MGEADVEVKDNEVYEEDLVDYEEEVENGADGAAAANASADVAKKGYVGIHSSGFRDFLLK
PELLRAIQDCGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSSLQQIDPVAGQ
VGALVLCHTRELAYQICHEFERFSKYLSEIKVAVFYGGVHIKKHKDLLKNDCPHIVVGTP
GRILALVREKDLSLKNVRHFILDECDKMLDSLDMRRDVQEIFKMTPHDKQVMMFSATLSK
EIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEAEKNRKLNDLLDALDFNQVVIF
VKSVSRAAELNKLLCECNFPAISIHSGMTQEERLTRYKNFKEGHKRILVATDLVGRGIDI
ERVNIVINYDMPDSADSYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKE
LPEQIDTSTYMPS
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atgggcgaggccgacgtcgaggtcaaggacaacgaggtgtacgaggaggatctcgtcgac
tacgaggaggaggtggagaatggggccgacggcgccgccgcggccaacgcgtccgccgac
gtggccaagaaggggtacgtggggatccacagctcggggttcagagacttcctgctcaaa
ccggagctgcttcgcgccatccaagactgcgggtttgagcacccttccgaagtgcaacat
gaatgcatcccacaagccattcttggaatggatgtcatctgtcaagcaaaatctgggatg
gggaagaccgcagtttttgttctctcaagtcttcagcaaatcgatcctgttgctggtcaa
gttggtgcacttgtgctatgccacacaagggagctagcttaccagatttgccatgaattt
gagaggttcagcaagtacctttctgaaattaaagttgctgtcttctatggtggcgttcac
ataaaaaagcacaaggatctgttgaagaatgactgtcctcatattgtggttgggacacct
ggaaggatactagctctagttagagaaaaggacctttccttgaagaatgtgaggcatttc
attcttgatgaatgtgacaagatgcttgattcacttgacatgcgtagagatgtgcaggag
atcttcaaaatgacaccccatgataagcaagtgatgatgttttcagcaaccctcagcaag
gagattcgcccagtttgcaagaaattcatgcaagatcctatggaaatttatgttgatgat
gaggctaaactgacccttcatggcctagttcagcactatataaaactaagtgaggcggag
aagaaccgaaaattgaatgatctcttagatgcactggacttcaatcaagttgtgatattt
gttaaaagtgttagtagagctgcagaactgaacaagctgctttgtgaatgcaactttcct
gcaatctccatacattctggaatgacacaggaggagaggctgacccggtataagaacttt
aaggaaggacacaagaggattcttgtggcgactgatttagttggcaggggaattgatatt
gaacgtgtcaacattgtcataaactatgacatgcccgattctgctgattcgtatttgcac
agggttggaagggctggacgtttcggaaccaaaggacttgcaataacatttgtttcctct
gcctctgactctgatgttcttaatcaagtgcaagaaaggtttgaggttgacatcaaggag
cttcctgagcagattgatacctcgacatatatgccttcttag
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