Oryza brachyantha (malo sina): 102708613
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Entry
102708613 CDS
T02995
Name
(RefSeq) probable pectate lyase 8
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
obr
Oryza brachyantha (malo sina)
Pathway
obr00040
Pentose and glucuronate interconversions
obr01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
obr00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
102708613
Enzymes [BR:
obr01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
102708613
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Sensor
Motif
Other DBs
NCBI-GeneID:
102708613
NCBI-ProteinID:
XP_040379291
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All DBs
Position
4:1467192..1472806
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AA seq
436 aa
AA seq
DB search
MARRWAAAVGAGLVLLLVGTVALSGGGSGGRLLAGLRRGGGDADASAATMTVPGAVDDPE
EVVSQVHMSIRNSTARRKLGYLSCGTGNPIDDCWRCDPDWHNNRQRLADCGIGFGRNAIG
GRDGKIYVVTDPGDDDPVNPKPGTLRYAVIRDEPLWIIFKRDMVITLKQELIMNSFKTID
GRGANVHIANGACLTIQYVTNIIIHGLHIHDCRPTGNAMVRSSPSHYGWRTMADGDAVSI
FGASHIWVDHCSLSNCADGLIDAIMGSTAITVSNNYFTHHNEVMLLGHSDSYVKDKAMQV
TIAFNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSAEPTINSQGNRYLAPTNPF
AKEVTKRVETAQSIWKGWNWRSEGDLLLNGAFFTPSGAGASASYSRASSLGAKSSSMVGT
ITSGAGALSCRGGSAC
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atggcgaggaggtgggcggcggcggtcggggccgggttggtgctgctcctcgtcggcacc
gtcgcgctcagcggcggcggctctggtggccggctccttgccgggctccggagaggtggc
ggcgacgccgacgcgtcggcggcgacgatgacggtgcccggcgcggtggacgacccggag
gaggtggtctcgcaagtgcacatgtcgatcaggaacagcacggcgaggaggaagctgggg
tacctgtcgtgcggcaccggcaacccgatcgacgactgctggcggtgcgaccctgactgg
cacaacaaccggcagcggctggccgactgcggcatcggcttcggccgcaacgccatcggc
ggccgcgacggcaagatctacgtggtgaccgaccccggcgacgacgaccccgtgaacccc
aagcccggcacgctgcggtacgccgtcatccgggacgagccgctgtggatcatcttcaag
cgcgacatggtcatcacgctcaagcaggagctcatcatgaacagcttcaagaccatcgac
ggccgcggcgccaacgtgcacatcgccaacggcgcctgcctcaccatccagtacgtcacc
aacatcatcatccatggcctgcacatccacgactgcaggccgaccggcaacgccatggtc
cgcagctcgccgagccactacggctggcgcaccatggccgacggtgacgcggtctccatc
ttcggagctagccacatctgggttgaccattgctcgctctccaactgcgccgacggcctc
atcgatgccatcatgggatccactgccatcacagtgtccaacaactacttcacccaccac
aatgaggtgatgctcctggggcacagtgattcctatgtgaaggacaaggcaatgcaggtt
acaatagccttcaaccattttggagagggtctcattcagagaatgccaaggtgcaggcat
ggttacttccatgtggtgaacaatgactacacacactgggagatgtatgccattggtgga
agtgctgaaccaaccatcaacagccagggcaaccgctaccttgctccgacaaatcccttt
gccaaagaggtgacaaagagggttgaaactgcccagagcatctggaagggctggaactgg
agatcagagggagatctcctgctgaacggtgccttcttcaccccatcaggggcaggtgcc
tcggccagctactcgcgagcctccagccttggcgccaagtcatcgtccatggtcggtacc
atcacatccggtgcaggcgccttgtcgtgccgcggtggctcagcctgctag
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