Oryza brachyantha (malo sina): 102709245
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Entry
102709245 CDS
T02995
Name
(RefSeq) LOW QUALITY PROTEIN: protein SHORTAGE IN CHIASMATA 1 homolog
KO
K28108
shortage in chiasmata 1
Organism
obr
Oryza brachyantha (malo sina)
Brite
KEGG Orthology (KO) [BR:
obr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
obr03036
]
102709245
Chromosome and associated proteins [BR:
obr03036
]
Eukaryotic type
Meiosis-specific proteins
Others
102709245
BRITE hierarchy
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Ortholog
Paralog
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GFIT
Other DBs
NCBI-GeneID:
102709245
NCBI-ProteinID:
XP_040376675
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Position
2:complement(19206398..19213821)
Genome browser
AA seq
1707 aa
AA seq
DB search
MRTRFLATDYFAPSSSSSSSSGQALVLECFSFPSLTIPALPPDPHFLPFTTVAELPAATV
ASDGLDYLPIASALSDFLAAVIPQALPVPIVPSAGEVLDDFLYDRVGDGEGLNSWESTAF
EASEKXTFXGYGVINCEKDEKADGSRSEGPEISTVMKRWGPLKEIRFEVVEVDLLTALQE
DIASFGEESSGGGVTLLFRVPDMKIHLDFIDIDTDTKIRYQSDLAESVYQVEKIPLKDND
GEERSSMRDFCCLEIAALDHGVAIPRLEASRNSWELDDCLAETDRSNVFHNVVRHLDEAH
IQHPVFKSTEFLRSADMDMLTFVCGDVPYHDIQVDKPTTVKAAVEMDLVRINDNILLEKN
SELYPLKPDGTCSDLPCSIHLEEMQIIDFPSDDVFKMLVQSETAKMNISDEIFKDDFDPA
RRLYELMVSSELALVDDTFRSLPTPILNDDIAVRSMVPPIQEILCSLKPHPLSATDGIYL
DWHLLLEEPCNREICCSYASMVEEVKACLLSFELQRSCQGTLVFDSDFLLEFQRSSKLQD
VDKFNNIYIPAPLSHDPQKLEATQKCVKEGGTRSRSNMEEVNPEKSSSFPQSISQSNDLN
FYFNVRSGSRRETNYDNTSSLDIPPSKEQAFSFSTRDKVDKLIEIHPVNPSNLIRGLIEQ
IHASYTSALQESTYWRHSFSDGQCLGISKHKLLELITGEGSEGLHNDCEHKDKMELIVLY
ALKQVAYYLCFFGLHAANLYISNLTGSFESTPERLKHIQCSISEAQTKSEKQLLESHPSL
SYIETILRSNKQTGLKILIVADRAFWLPLGQKLTSMKMTFVEFGKNPAKTYVDLVNKTNS
TTWVLEELLKSDCILLDNKNIPASFPFDEFGIILEYGGPNKSSTLLSLAPKLDGLPPLHF
LYVKVDSKDFPVALVEDNHKDQDLKSTLEKVLLTLQKDLQEKMNKMRIVDSLNFIPATNQ
LQGLQEKVSKHFAADFRKELLPDDQWHGLQNLKKKNTSDSHNFVLADEQQHIHQTMSNRP
VVNSENCVPAVEKSSSTSSVSATVLKDPQENQSTTDLPYSAKNGSIMTGRLSVPEVVIVV
NTVNHGKTMLVSRRSSYQQILALEKGGMHVVERDIDLPVDIILSSAVCLVWYETMLFESN
EPTTSEETSGINFFVESIATNILMSVSFSFTGCIMVFEGEAHFLSAVMDSSDSLYAAAAS
LDMNLQLFFSHTPKLTDEIIHNCIMNVTSLNKAPSADVPESETLAESFLTSFPSINPLSA
YMILSSGDSLVEFLSWPHERRIQKVEKYLLSPKIISLFNALCKFGELGESRSVMTECSSV
DSDISSALLQSPRKRKKRASQAFAVPTSDLFSESLNQMPGDYAEHAEVFTPSKLRKFCDM
DNAIRELPDVFTFDQSLNMGSDGFSYQQKKHGVDAIPGNHIIDDDFSNGLTPNIRAYNRS
DNMVDTFNFPCEPEFGGKHHTSPTNRPSFSRTHSNPVFSTALEINGDPGERNISGGTKQT
WKGLAHGGIADDSYRYDMDSKYQETRDEIVQPPASSLALQKLEFGSHATSQGSCWEIDYL
RQMSAKRKARQERSRCNNSAMSNPRMWDGNSKILSPPIESFRYRDRDTPSRDQSPSIGTQ
HYGKGKEGAKTHNRRARKDFNVQPTITHKKRIEPSIDPTWTPIDKRARQKLSFVTYGKEK
QSKLVWRNQNSPGVGCGFRKRFGEEGT
NT seq
5124 nt
NT seq
+upstream
nt +downstream
nt
atgaggacgcgcttcctcgccaccgattacttcgcgccgtcatcttcctcctcctcctcc
tccggccaagcactagtcctagagtgcttcagcttcccctctctcaccatccccgccctt
cctcccgatccccacttcctcccgttcaccaccgttgccgaactccccgccgccaccgtc
gccagcgatggccttgactatctccccatcgcctccgcgctctccgacttcctcgccgca
gttatcccgcaggccctgcctgtgcctattgtgccctcagccggcgaggtattggacgat
ttcctgtacgacagggtcggagatggcgagggtttaaactcatgggagtctactgcattc
gaggcaagtgaaaagtgaactttctaaggatatggcgtgatcaactgcgagaaggatgaa
aaggcagacggctctagatcagaaggtccagagatttccacagttatgaagaggtgggga
ccattgaaggagattagatttgaggttgtagaggtggatctcctaacggctttgcaagaa
gacattgcatcctttggtgaggagtcatctggtggtggtgtcacattgttgtttcgtgtt
ccagatatgaaaatccatttggatttcattgatattgacaccgacacaaaaataagatat
caatctgatcttgcagagtcagtgtatcaagtagaaaaaatccctttaaaagacaatgat
ggtgaggaacgttcttctatgagagatttttgctgcttggaaattgcagcactagatcat
ggtgtagcaatacctcgattggaagcaagtaggaattcctgggagcttgatgattgtctg
gctgagactgacagatccaatgttttccataatgttgttagacacttggatgaagcacac
attcagcatccagtgttcaaatcaactgagttcttgagatcagctgatatggacatgcta
acctttgtttgtggagatgtgccataccatgacattcaagtagataaaccaacaacagtc
aaagctgcagtagaaatggatcttgtgaggatcaatgataatattttgcttgaaaaaaat
tcagaactctaccccctcaagcctgatggcacttgttcagacttgccttgctccattcat
ttagaggagatgcagatcattgattttccttcagatgatgtattcaaaatgcttgttcag
tcagagacagctaagatgaatatatctgatgaaatattcaaagatgattttgatcccgca
agacgcttgtatgaattaatggttagctctgagttagcgctggttgatgatacatttaga
tcacttcctacacctatcttaaatgatgatatagcagttaggtctatggtccctcccata
caagaaatattatgctccctgaaaccacaccctctatcagcaactgatggaatttatttg
gattggcatctcttattggaagaaccatgcaaccgggagatttgctgttcgtatgcaagc
atggttgaggaggtaaaagcttgccttttaagttttgagctgcaaaggagctgtcagggg
acattagtatttgacagtgattttctgttggagtttcaaagaagttcaaagcttcaagat
gtggataaatttaacaatatttatattcctgcccctctgtctcatgatccgcaaaaattg
gaagcaactcaaaaatgcgtaaaagaaggtggtactagaagccgtagtaacatggaagaa
gtgaatccagaaaagtcatcttccttccctcagtcaatctcacagtccaatgacctaaat
ttctacttcaatgtcagaagtggctctaggagagaaaccaattatgataatacttcaagt
ttagacatcccaccttcaaaagagcaagcattctccttttcaacaagggataaagttgac
aaactcatagaaattcatcctgtcaacccctcaaatcttatccgaggccttatagaacaa
atccatgcaagctatacatctgctttgcaagaaagcacatattggaggcattctttctca
gatggacaatgtttaggaatttcaaagcataagcttcttgaattgataactggagaaggt
tcagaaggcttgcataatgactgtgaacacaaagataagatggaactcattgtactgtat
gcattaaagcaggttgcgtattacctatgtttctttggtctgcatgctgccaatttgtac
attagcaacctgactggaagctttgaaagcactcctgagaggttaaaacatattcaatgt
tccatttctgaagcacagacgaaatctgagaagcaactgcttgaatctcatccgtcattg
tcatacattgagacgatcctgagatctaataaacaaactggccttaagattcttatagtt
gctgatagagctttctggttgccactgggtcaaaagctaacttccatgaagatgacattt
gttgagtttggaaaaaaccctgcaaaaacttacgtggatcttgtgaacaagacaaactct
acaacttgggtcctggaagaattactgaaatcagactgcattctgctagataacaagaac
attccagcttcattcccttttgatgagtttggcatcatactggaatatggaggtccgaat
aaatcatctaccttgttatctcttgctcctaaattagatggcttgccacctctgcatttt
ctctatgtcaaagttgatagcaaggactttccagttgcactagtcgaggacaaccataaa
gaccaggatttgaaatccacattggaaaaagttttgcttacacttcagaaagacttgcag
gagaagatgaataaaatgcgtattgttgattcattaaactttataccagcaacgaatcaa
ctgcaaggtcttcaagaaaaagtgagcaaacattttgctgctgatttcagaaaagaactg
cttccagatgatcaatggcacggattgcaaaatctcaaaaagaagaatacttctgattca
cataactttgttcttgctgatgaacagcaacacatacatcaaacaatgagtaatagacct
gttgtcaattcagaaaactgtgtaccagcagttgagaagagtagctctacttcttctgta
tctgccactgtactgaaagacccccaagagaatcaatcaactactgacttaccttacagt
gcaaaaaatggtagcataatgacaggacgattgtccgtcccagaggtggtgatagttgta
aatactgtaaatcatggaaaaacgatgcttgtttcccgaagatcatcttatcagcagata
ttagctctggagaaaggaggaatgcatgttgtggagcgagatattgatctgcctgtggac
ataatactcagttctgcggtttgcctagtatggtatgagaccatgctctttgagtccaat
gaaccaacaacatcagaagagacatcgggtataaatttttttgtagagagtattgcaacc
aacattctgatgtcagttagtttctctttcactggctgcataatggtctttgagggagaa
gctcacttcctttctgctgtaatggactcatctgattcgctgtatgctgcagctgctagt
ttggacatgaacttgcagctgttcttctcacacacacccaagctaacagatgaaataatt
cacaattgcattatgaatgtgactagcttgaataaagctccttctgcagatgtacctgaa
tcagaaaccctggctgaatcatttctcacaagtttcccttccatcaatcccttgtctgca
tacatgatactttcttctggagacagccttgtggagttcctcagttggccacatgagcgt
cggattcagaaagttgaaaagtatcttttatctccaaagatcatttccctatttaatgct
ttgtgcaaatttggtgagttaggtgaatcaaggtctgtaatgactgagtgctcttcagtc
gattcagatatcagtagtgcattgctgcagtctccgaggaaaaggaaaaagcgtgcctcc
caggcttttgcagtaccaactagtgatctcttttctgaatctcttaaccaaatgcctggt
gactatgcagaacatgccgaggtattcacaccttctaagttgaggaagttctgtgacatg
gataatgcaatccgtgagctcccagatgtctttacattcgatcaaagtttgaatatggga
agtgatggattctcttatcaacaaaagaagcatggtgtggatgcaatacctggcaatcat
atcattgatgatgatttcagcaatggattgaccccaaatattcgagcatataataggagt
gacaatatggtggacacattcaactttccctgcgaacctgaatttggtggtaagcatcac
acttctcccacaaacagaccatctttcagcagaactcacagcaatccagtattttcaact
gcattagagatcaacggtgatcctggcgagcggaacatttcaggaggtactaaacaaaca
tggaagggtcttgcacatggaggtattgcagatgactcctacagatatgatatggatagc
aaatatcaggaaacaagagatgaaattgtgcaacctccagcaagttcgcttgctttgcag
aaactagaatttggcagtcatgcaacttcacaagggtcatgctgggaaattgattatcta
aggcaaatgagtgcaaagagaaaagcacgtcaggagagatcaagatgtaataattcggct
atgtcgaacccaagaatgtgggatggcaactcaaagattctaagtccacctatagaatcc
ttcagataccgagatagagacactccttcgagggaccagagtccttcaattgggactcaa
cactatgggaaaggcaaggaaggagctaaaacacataatcgcagagcaaggaaggatttc
aatgtacaaccaactataacccacaaaaagaggatagaaccgtctattgatccaacatgg
actcctattgacaagagagcaagacagaaactttcatttgttacatatgggaaggaaaaa
caaagcaagctggtctggcgaaaccagaacagccctggtgttgggtgtggcttccggaaa
agattcggggaggaaggtacgtag
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