Oryza brachyantha (malo sina): 102709515
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Entry
102709515 CDS
T02995
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH9
KO
K13117
ATP-dependent RNA helicase DDX35 [EC:
5.6.2.6
]
Organism
obr
Oryza brachyantha (malo sina)
Brite
KEGG Orthology (KO) [BR:
obr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
obr03041
]
102709515
Enzymes [BR:
obr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
102709515
Spliceosome [BR:
obr03041
]
Complex C
Other components
Complex C specific factors
102709515
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
AAA_22
HA2_N
DEAD
AAA_30
AAA_19
AAA_29
AAA_7
T2SSE
Motif
Other DBs
NCBI-GeneID:
102709515
NCBI-ProteinID:
XP_015692375
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All DBs
Position
1:4608850..4620531
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AA seq
701 aa
AA seq
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MSRFWRPGSEKPTAAIVEDEEGGVLFLPTNTSASSSSSGFGYASLERQRQRLPVYKYRRA
ILYLVERHATTIVVGETGSGKSTQIPQYLKEAGWAEGGRLIGCTQPRRLAVQTVASRVAE
EIGVRLGDEVGYTIRFEDQTNPGTTMIKFLTDGVLIREMMEDPLLTKYSVIMVDEAHERS
ISTDMLLGLLKKIQRRRPDLRLIISSATIEARSMSTFFNIRRKNSMVESADRLPNPEPAI
LSVEGKGYTVEIHYVEEPVSDYLQAAVNTVLIVHEKEPPGDILVFLTGQDDIDAAVKMLN
EEIQHRGRHYLGLLILPLYSGLPRGDQDLIFTPTSKGKRKVVLSTNIAETSLTLEGVVYV
LDSGFSKQKCYNPISDIESLVVAPISKASARQRAGRAGRVRPGKCFRLYTEEYYLKEMQP
EGIPEMQRSNLVSCIIQLKALGIDNILGFDWPASPSPEAMIRALEVLYSLGILDDDAKLT
VPLGFQVAEMPLDPMISIMILSANNFGCSDEILTIAAFLSVQSVWVSMRGVKKEFDEAKL
RFAAAEGDHVTFLNIYKGFHQSGKSSQWCYKNFLNHQALKKVIDIREQLVRITKRFGLPL
TSCDRDMEAVRKAVIAGAFANACHLEEYSQNGMYKTIRTSQEVYIHPSSVLFRVNPKWVI
YQSLVSTDKHYMRNVIAIEPSWLTEAAPHFYQFRTPNPVLH
NT seq
2106 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaggttctggaggccggggtcggagaagccgaccgcggcgatcgtcgaggacgag
gagggcggggtcctcttcctgcccacaaacaccagcgcctcctcctcctcatctgggttt
gggtacgcgagcttggagcggcagcggcagcggctgccggtgtacaagtaccgcagggcc
atcctctacctggtggagcggcacgccactaccatcgtcgttggcgagaccggcagcgga
aagtccacgcagatcccccagtaccttaaagaggctggatgggccgagggcggtcgactt
ataggctgcactcagccaagacggttggctgtgcagacagttgcatcaagagtagcggaa
gaaataggtgtgagacttggagatgaagttggttatacaattcgatttgaggatcaaaca
aatccaggtacaaccatgattaaatttctgacagatggggtattgatcagagaaatgatg
gaagatcctcttttgaccaagtacagtgtaattatggttgatgaagcccatgaaagatcc
atttcaacagacatgttgctgggtcttctgaaaaagattcaacgacgtcggcccgacttg
cgtctaatcatatcctctgcaacaattgaagcaagatccatgtcaacttttttcaacatt
aggcgaaagaattctatggttgagtctgctgatcgtttgcccaacccagaacctgctata
ctttccgtggaaggtaaaggttacacggtggaaattcattatgttgaagaacctgtctca
gactacttgcaggctgctgtgaatactgtacttattgttcacgaaaaggaaccaccaggg
gatattttggtgtttttaactggccaggatgacatagatgcagctgttaagatgctaaat
gaggaaattcagcaccgtggaagacattatctgggcctgctgattctgcccttgtactct
ggccttccacggggagatcaagacctcattttcactccaacttcaaaagggaaaaggaag
gttgtgttatcaacaaacatcgctgagacgtcactaactctagagggtgtggtgtatgtc
ctcgatagtgggttttccaagcagaaatgttataatccgatttctgacatcgagagttta
gttgtcgcaccaatatccaaggcatccgcaaggcaaagagcaggcagagctggaagggtg
cggcctgggaagtgctttaggctatatacagaggaatattaccttaaagaaatgcagcca
gaagggattcctgaaatgcaaaggtctaaccttgtttcctgcataatacagttgaaagct
ctaggcatagacaacattttgggattcgattggccagcttctccatcaccagaggcaatg
attcgagctcttgaagttctatattctctaggaatccttgatgacgatgccaaattaacg
gttccccttggtttccaagttgctgagatgcctctggaccctatgatttcaataatgatc
ttgtcagccaataatttcggatgctctgatgagatattgaccatagccgcatttctatct
gttcaatctgtttgggtctccatgagaggagtgaagaaagaatttgatgaagccaagctt
cgttttgctgctgctgagggagatcatgtgacgttcctgaatatttacaaaggatttcat
caatctggaaaatctagtcagtggtgttataagaactttttgaaccaccaagcattgaag
aaggttattgacatcagggagcagcttgtcaggattacaaagaggtttggcctaccacta
acgtcatgtgatagagatatggaggctgttagaaaagctgttattgctggtgcatttgct
aatgcatgtcatctggaggaatacagccaaaatgggatgtacaaaacaataaggacctca
caagaagtttatattcatccttcttctgtgctatttagggttaatccaaagtgggtcatt
tatcagtctcttgtttcaactgataagcactatatgcgtaatgttattgccattgaacca
tcatggcttactgaagctgcaccacatttctatcagttccggacacccaatccagtcctc
cactaa
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