Oryza brachyantha (malo sina): 102709661
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Entry
102709661 CDS
T02995
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 52B
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
obr
Oryza brachyantha (malo sina)
Brite
KEGG Orthology (KO) [BR:
obr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
obr03019
]
102709661
03041 Spliceosome [BR:
obr03041
]
102709661
03036 Chromosome and associated proteins [BR:
obr03036
]
102709661
Enzymes [BR:
obr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
102709661
Messenger RNA biogenesis [BR:
obr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
102709661
mRNA cycle factors
Common to processing body (P body) and stress granule
102709661
Spliceosome [BR:
obr03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
102709661
Chromosome and associated proteins [BR:
obr03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
102709661
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
102709661
NCBI-ProteinID:
XP_040382005
LinkDB
All DBs
Position
7:complement(3492860..3498334)
Genome browser
AA seq
642 aa
AA seq
DB search
MRSSWADSVANAEESAPATAVANGPVANHGNSRLPRSSYVPPHLRGHSSGAGVEAQAAPA
VPAQAGTLPSAAAQPSGHPGVAGGPGWAGIVNGGGSGSVGGSRQGYGVGSGSRGGGGTGW
NSRPGGWDRRDREPDPFANSDAADVDFEGENTGINFDAYEDIPVETSGHDVPPPVNTFAA
IDLGDALNENIRRCKYVKPTPVQRYAIPISMAGRDLMACAQTGSGKTAAFCFPIISGIMK
SRPPPRSRGSRTAYPLALILSPTRELSVQIHEEARKFAYQTGVKVVVAYGGAPINQQLRE
LERGVEILVATPGRLMDLLERARVSLQMIKYLALDEADRMLDMGFEPQIRKIVEQMDMPP
RGERQTMLFSATFPKEIQRMASDFLADYIFLAVGRVGSSTDLIVQRVEFVLEADKRSYLM
DLLHAQRANGTHGKQALTLVFVETKRGADALENWLCNNCFPATSIHGDRTQQEREYALRS
FKSGATPILVATDVAARGLDIPHVAHVINFDLPNDIDDYVHRIGRTGRAGKSGLATAFFN
ESNTSLARSLSELMQEANQEVPQWLERYAARSSYGGGGGGRNRRSGGGARFGGRDFRRDR
GSSGGGYGGGGGAYGGGGYGGGGYGGGSSYGGGGQGISSAWD
NT seq
1929 nt
NT seq
+upstream
nt +downstream
nt
atgcgatcttcatgggctgactcagttgcgaacgccgaggaatcggcgcccgcgactgct
gttgctaacggacccgttgctaatcacggcaactcgcgcctgccgcgcagctcctacgtt
cctccgcacctacgtggccactcgtctggtgccggtgtcgaggcccaagcagctccagcg
gtgccggcacaagctggcacgctgccctcagctgctgcacagccttctggccatcctggt
gtggctggcggccctggctgggcaggcattgtgaatggtggtggcagtggcagcgtgggt
ggttctcgccagggctatggcgttggtagcggtagccgtggtggcggcggcactggttgg
aactcccgccctgggggttgggaccgaagagaccgtgaaccagatccctttgccaacagt
gacgctgcagatgttgactttgagggtgagaacacaggcatcaattttgatgcttacgaa
gacattcctgttgagacaagtggccatgatgtgcctccaccagtcaacacatttgcagcg
attgacttgggcgatgcgttgaatgagaatatcagaaggtgcaaatatgtgaagccaaca
ccagtgcagcgttatgccatcccaatctccatggcaggacgggatctcatggcctgtgca
caaacagggtctggaaagacagcagccttttgtttccctatcatcagtggaatcatgaag
tcaaggccacctcccaggtcacggggttctaggactgcatatcctcttgcactaatccta
tctcccactcgtgagctttcagtccaaatccatgaagaagcgaggaagtttgcataccag
actggtgttaaagtagtcgttgcatatggaggagcaccgattaatcagcagctgagggag
ttagaaagaggtgttgaaatccttgtggcgactcctggccgtttaatggatttattggag
agggctagagtctcattacagatgataaagtatttagctcttgatgaagctgatcgaatg
cttgatatgggatttgagcctcagattcgtaaaatagtcgagcagatggacatgcctcca
cgtggagagaggcagacgatgttgtttagtgctacatttccaaaggagatacagaggatg
gcttcagatttccttgctgattacatatttcttgctgttgggagagttggctcaagtact
gatttgattgtccagagggttgagtttgtccttgaggctgacaaaagaagctacctcatg
gaccttcttcatgcacaacgggcaaatggtacacatgggaagcaagctcttaccttggtc
tttgtggagacaaagaggggagctgatgctctggagaactggctttgtaacaattgtttc
ccagcaactagcattcatggagacagaacacaacaggaaagagaatatgcactgagatcc
ttcaagagtggagcaactcccatcctcgtggcaactgatgttgctgctcgtggactggat
atacctcatgttgctcatgtcattaattttgatctcccaaatgatatcgatgactatgtc
catcggataggaaggacagggcgtgcagggaaatctggtctggcaactgcatttttcaac
gagagcaacacctcactggcacggtcactgagtgagctcatgcaggaggctaaccaggag
gttcctcaatggcttgagaggtatgctgcccgttcatcgtatggaggtggtggtggcggc
agaaaccgcagatcaggtggtggtgctaggttcggcggtcgtgacttccggcgagacagg
ggcagcagtggtggagggtatggtggtggaggtggagcttatggaggcggtggctatggt
ggtggcggctatggtggcggcagcagctacggtggaggcggtcaaggtatatctagtgct
tgggactga
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