Oryza brachyantha (malo sina): 102709777
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Entry
102709777 CDS
T02995
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 12
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
obr
Oryza brachyantha (malo sina)
Pathway
obr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
obr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102709777
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
obr03019
]
102709777
03036 Chromosome and associated proteins [BR:
obr03036
]
102709777
Enzymes [BR:
obr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
102709777
Messenger RNA biogenesis [BR:
obr03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
102709777
mRNA degradation factors
5'-3' decay
Decapping complex
102709777
Chromosome and associated proteins [BR:
obr03036
]
Eukaryotic type
Gene silencing
piRNA pathway
102709777
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
NA-iREase2
EPL1
Sirohm_synth_M
DUF5384
Motif
Other DBs
NCBI-GeneID:
102709777
NCBI-ProteinID:
XP_015697482
LinkDB
All DBs
Position
10:complement(13246920..13254713)
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AA seq
518 aa
AA seq
DB search
MHHPRARYPPGYGSGGGGGGDGGRGNGGGGGFGGRGGGGGGGGGNHNYYGRGPQPQPQHH
HYQAHQQQQYAQRSNTQQQQQHQQQQWLRRNQASAAEPGEAAARTAAQLDAVVDSSSEDW
KSQLNLPAPDTRYKTEDVTATKGNEFEDYFLKRELLMGIYEKGFERPSPIQEESIPIALT
GSDILARAKNGTGKTAAFCIPALEKIDPEKNAIQVVILVPTRELALQTSQVCKELGKYLN
IQVMVSTGGTSLKDDIMRLYQPVHLLVGTPGRILDLTRKGICVLKDCSMLIMDEADKLLA
PEFQPSVEQLIRFLPANRQLLMFSATFPVTVKDFKEKYLPRPYVINLMDELTLKGITQHY
AFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYIHAKMLQDHR
NRVFHDFRNGACRNLVCTDLFTRGIDIQAVNVVINFDFPKTSETYLHRVGRSGRFGHLGL
AVNLITYEDRFNLYRIEQELGTEIKPIPSQIDLAVYCQ
NT seq
1557 nt
NT seq
+upstream
nt +downstream
nt
atgcaccaccccagggcgcgctatcctcccggctacggctccggcggcggcggcggcggt
gacggcggccgcggtaatggtgggggtggcggcttcggaggaagaggtggcggtggtggt
ggcgggggtggaaaccacaactactacggccgcggcccgcagccgcagccgcaacatcac
cactaccaggcgcatcagcagcagcaatatgcgcagaggagcaacacgcagcagcagcag
cagcaccagcagcagcagtggctgcggcggaaccaggcctcggcggctgagcccggggag
gccgcggcgaggacagcggcgcagctggatgccgtcgtcgactcgagttctgaagattgg
aagtcacaattgaatttgccagctccagatacgcgttataagaccgaggatgtcactgca
acaaaaggcaatgagtttgaggattactttttgaaacgtgaactactaatgggaatttat
gagaaaggatttgaaaggccatcacctatccaggaagaaagcattccaatagctctgact
ggtagtgatattcttgcgagagctaaaaacggcactgggaagactgctgcattttgcatt
cccgccctagaaaaaattgatccggagaaaaatgccatacaagttgttatattggtacca
acacgggaactagctctgcagacttcccaagtttgtaaagagctcggaaagtacctgaat
attcaagttatggttagtactggagggaccagcttgaaggatgacattatgcgtttgtat
caacctgttcatttgcttgttgggacacctggtcggatactggatctaacaaggaagggc
atttgtgtgctgaaggattgttcaatgctcataatggatgaggctgacaagctgttagct
ccagagtttcagccttctgtagagcaactcatccgtttccttccagccaatcgtcaacta
ttgatgttttctgcaacttttccagtaaccgtcaaggatttcaaggagaaatatctacct
aggccttatgttattaatcttatggatgagctaacgctaaaaggaattacacaacactat
gctttcgtggaagaacgacagaaagttcattgtctgaatacacttttctcaaagcttcaa
ataaatcagtccattatattctgtaactctgttaatagagttgagctattggccaagaaa
atcaccgagcttggctattcatgcttctacattcatgcaaaaatgttacaagaccatcga
aaccgagtgttccatgattttcgcaatggtgcttgcagaaaccttgtgtgcacagatctg
tttacaagaggaattgacatccaagctgtcaatgttgtcattaattttgactttcccaag
acctctgaaacatatttgcatagggttggtcgttcagggagattcggacaccttggtttg
gcagtgaacttgatcacctatgaggaccgtttcaacttgtatcggattgagcaagaactt
gggacagaaataaaaccgataccctcacaaattgatctggcggtgtattgtcaatga
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