KEGG   Oryza brachyantha (malo sina): 102709945
Entry
102709945         CDS       T02995                                 
Name
(RefSeq) tyrosyl-DNA phosphodiesterase 1 isoform X1
  KO
K10862  tyrosyl-DNA phosphodiesterase 1 [EC:3.1.4.-]
Organism
obr  Oryza brachyantha (malo sina)
Pathway
obr03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:obr00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    102709945
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:obr03400]
    102709945
DNA repair and recombination proteins [BR:obr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Other BER factors
     102709945
SSDB
Motif
Pfam: Tyr-DNA_phospho FHA_2 FHA Yop-YscD_cpl
Other DBs
NCBI-GeneID: 102709945
NCBI-ProteinID: XP_006657783
UniProt: J3MLJ0
LinkDB
Position
7:complement(12778511..12787617)
AA seq 664 aa
MSSSSQVRVGTLVPIAEGNAGSSNGTVLSIPIYLGANVIGRNHLVVVDKRISRKHLSLHA
TADGSTEVVVEGPNPVVVRSEGQRRKVCAQERVKIVHDDVLELIPGEYFVKYVNVGDDRR
SSALMGSSELKKGKRHSEEDSVVVKRNRQIMEDEALARSLQEGFAEESATISGLGCDQIS
RPLDSTGSSERIQSVGPLKDVLSLTLRLMRVQGLPSWTNTSSVTIQDVIQGEVLLAVLSN
YMVDIEWLLTACPSLRKVRHVLVIHGEDGASVELLKKVKPANWILHKPPLPISFGTHHSK
AMLLVYPQGIRVVVHTANLIYVDWNNKTQGLWMQDFPWKDTKDVNKNVSFENDLIDYLSA
IKWPEFRVNLRVVGDVNINAAFFRKFDYKSSSVRLIGSVPGYHVGPNIKKWGHMKLRSVL
EGCTFEQQFCKSPLIYQFSSLGSLDEKWMSEFACSLSAGKSDNGSPLGIGKPLIVWPTVE
DVRTSIEGYAAGSCIPSPQKNVEKDFLRKYWARWKADHVGRCRAMPHIKSFTRYNGQNIA
WFLLTSSNLSKAAWGALQKNNTQLMIRSYELGVLFLPQTLQSVSQFSCTGKNNLNLAPGK
EIKTKLVTLCWKSADEKEPSTEIIRLPVPYQLPPKLYETEDVPWSWDRRYTKKDVYGSVW
PRHG
NT seq 1995 nt   +upstreamnt  +downstreamnt
atgtcgtcctcgtctcaagtacgggttggcactctagtccccattgctgaaggaaatgct
gggtcgtcaaatggaacggtgttaagcattccgatctatctgggtgccaatgtcattggg
aggaatcatctggtggtcgttgacaagagaatcagccgcaagcatctgagcctacacgcc
acggccgatggttccactgaagttgtagtggaaggaccaaatcctgtcgttgtccggtca
gagggccagaggaggaaggtttgtgctcaagagagagtgaagattgtacatgatgatgtc
ctggaactgatccctggtgaatattttgttaagtatgtgaatgtgggggatgaccgtaga
agttccgcattgatgggttccagtgagttaaaaaaggggaagaggcacagtgaggaagat
agtgtagttgtcaaaaggaatcgtcagatcatggaagacgaggctttggcaagaagttta
caggaaggctttgcagaagagagtgcaactatttctggcctgggttgtgatcaaatatca
agaccacttgatagtactggttcttctgagagaatacaatctgttggtcctctgaaagat
gtactttcattaactcttcggctcatgcgtgtccaaggtcttccttcatggactaatact
tcatcagttaccattcaagatgtcatacagggtgaagtgcttcttgctgtactctcaaat
tatatggtggacattgaatggttgcttacagcatgtccaagtttaaggaaagttcgacat
gtcctagttatacatggagaagatggtgcttcagtggaacttttgaagaaagtgaagcca
gcaaattggatccttcacaagcctccacttccaatttcatttggaacacatcattcaaag
gctatgctgcttgtatatcctcaagggattcgtgttgttgtgcacacagcaaatttgata
tatgttgactggaataacaaaactcaggggttgtggatgcaagattttccctggaaggat
acaaaagatgtgaacaaaaatgtttccttcgagaatgatttgattgattatctgagtgca
attaagtggcctgagttcagggtaaatctacgtgtggttggtgatgtcaacatcaatgca
gcattctttaggaagtttgattataagagctcatcggtcaggttgattggatcagttcct
ggttatcatgttggccccaatattaaaaagtggggccatatgaagcttaggagtgttctt
gaagggtgcacatttgaacaacagttttgcaagtctccgctgatttatcagttctcttcc
ttgggttcacttgatgagaaatggatgagtgagtttgcatgctcattatcagctggtaaa
tcagataatggttcaccgttgggtattggtaaacctctgattgtctggcctacagtggag
gatgttaggacatcaatagagggttatgcagctggtagttgcattccaagccctcaaaag
aatgttgaaaaagatttcttgaggaagtattgggccaggtggaaagcagaccatgtaggc
cgttgtcgtgctatgcctcacataaaatcttttactcgatacaatggtcaaaacattgca
tggtttctactgacctcatcaaatttaagcaaagctgcttggggtgcgttgcagaagaat
aatacacaactgatgatacgctcatatgagttaggtgtactgttcttgccccaaaccctc
caatctgtatcacaattttcatgtactggaaagaataacttaaacctggcccccgggaaa
gagatcaagaccaagctggtcacactctgctggaaaagcgccgacgaaaaagaaccatcc
accgaaatcatcagattgccagtgccatatcaacttcctccaaagctttacgaaactgaa
gatgtcccttggtcttgggataggaggtacacgaagaaggacgtgtatggctcagtatgg
ccgcgccatggttag

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