Oryza brachyantha (malo sina): 102710602
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Entry
102710602 CDS
T02995
Name
(RefSeq) zinc finger CCCH domain-containing protein 45
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
obr
Oryza brachyantha (malo sina)
Pathway
obr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
obr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
102710602
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
obr03021
]
102710602
03019 Messenger RNA biogenesis [BR:
obr03019
]
102710602
Transcription machinery [BR:
obr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
102710602
Messenger RNA biogenesis [BR:
obr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
102710602
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
zf-CCCH
zf_CCCH_4
Torus
zf-CCCH_2
zf-CCCH_RBM22
zf-CCCH_3
TFIIA
Motif
Other DBs
NCBI-GeneID:
102710602
NCBI-ProteinID:
XP_006657248
LinkDB
All DBs
Position
6:19708462..19713740
Genome browser
AA seq
661 aa
AA seq
DB search
MDDGDLSFDFEGGLDQAPAAAGGPAPHAADAGVVGGGGGGGDGGGHGRARRGGSSYRQTV
CRHWLRGLCMKGEACGFLHQFDKSRMPVCRFFRDYGECREPDCSYKHSYDDVKECNMYKM
GFCPNGPGCRYKHVKLPGPPPPVEEALQKILQIRSFNKFNQHRHNNYNQQGERSQHPQGS
GLPNQNSVDNTAATTAQPAVGQQVQTTNQQPPQQQQQQQQQKPNTNDQVQSAPNVPNGLS
NQATRIATPLPQGPSRYFIVKSCNRENLEISVQQGIWATQRSNEAKLNEAFESIENVILI
FSVNRTRHFQGCAKMTSRIGGYIGGGNWKSAHGTAHYGRNFSMQWLKLCELSFQKTHHLR
NPYNDNLPVKISRDCQELEPLIGEQLASLLYLEPDSELTAILIAAEAKREEEKAKGVSAD
EATDNQDIVLFDDNEEEEEEESEEEEEGNAQESQGRGRGRGMMWPPQMPMLRGVGPMMGG
RGFPPNMMGDGFGFGGGFGMPDPFGMPRGFPPFGGPRFPGDFARGGPMPGMVFPGRPPQP
GGMFPMGLDMMMGPGRGPLMGGMGMGGPGRPNRPVGMAPFMPPPPPPNNRGAKREQRRPG
GERGDRYETTSDQGSRGHDATGNSGAEGTRSQSGDRYGRSALRDDDSESDEEAAPRRSRK
R
NT seq
1986 nt
NT seq
+upstream
nt +downstream
nt
atggacgacggcgacctcagcttcgacttcgagggcggcctcgaccaggcccccgccgcc
gccggggggcccgcgccgcacgctgccgacgccggggtggtcggcggcggcggcggcggc
ggagacggcggcgggcacgggcgcgcccgccgcggtggcagtagctacaggcagacggtg
tgccggcactggctgcgcggcctgtgcatgaagggggaggcctgcgggttcctgcaccag
ttcgacaagtcccgcatgcccgtgtgccgcttcttccgcgactacggcgagtgccgcgag
cccgactgctcctacaagcactcctacgacgatgtcaaggagtgcaacatgtacaagatg
ggattttgccctaatggtcctggctgccggtacaagcatgtcaagttacctgggccacca
cctcctgttgaggaagctctgcagaagattttgcagattcgctctttcaacaaattcaat
cagcataggcacaataactataatcaacagggggagagatctcaacatccacagggttca
ggtttacctaaccaaaattcagtagataatactgcagccacaactgctcagcctgctgtt
ggacagcaagtacaaacaacaaatcaacagccgccacagcagcagcagcagcagcaacaa
cagaagccaaatacaaatgaccaagtccaatctgctccaaatgttccaaatggcttgtct
aatcaagccactagaattgcaacaccccttccacaagggccatctaggtacttcattgtt
aagagttgcaatagagagaatctggagatatcagttcagcagggcatctgggctacccaa
aggagcaatgaggctaaacttaatgaagcctttgaatccattgaaaatgttattttaata
ttctcagtcaatagaactcgtcatttccagggctgtgcaaagatgacttctaggattggt
ggctacattggtggtggaaattggaaatctgctcatggaacggcacattatggtaggaac
ttctccatgcagtggcttaagctttgtgagctgtcatttcagaaaacacatcatctccgc
aatccatacaatgacaatctccctgttaagatcagccgagattgccaggaactagaacct
ttaattggtgagcaattggcttcgctgctttatctagaaccagacagtgagctgacggct
atactaattgcagcggaggcaaagagagaagaagaaaaggctaaaggagtaagtgctgat
gaggcaactgacaatcaagatatcgtgctgtttgatgacaatgaagaagaggaggaagag
gaaagcgaggaggaagaagaaggcaatgctcaagaatctcaaggaaggggaagaggaagg
gggatgatgtggccacctcaaatgccaatgctacgtggtgttggaccgatgatgggaggg
cgtggcttccctcccaacatgatgggtgacggttttggttttggcggtggttttggaatg
cctgatcctttcggaatgcctcgtggttttccgccatttggtggcccaaggtttcctggt
gactttgctagaggaggtcctatgcctggtatggttttccccggcaggcccccacaacct
gggggcatgttccccatggggctagatatgatgatgggtcctggtcgtggaccactaatg
ggaggcatgggaatgggtggtcctggacgaccgaatcgacctgttggtatggctcccttc
atgcctccaccgcctccgccaaacaatcgtggcgcgaagcgggagcaaagaaggccaggt
ggtgagagaggtgacaggtatgagacgacctctgaccagggaagcaggggccatgatgcc
actgggaattctggagcagaaggaaccaggtctcagtctggggacagatatggtagaagc
gctctccgagacgatgacagtgagagcgatgaggaagctgcgcctaggaggtcgcggaaa
cgataa
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