Oryza brachyantha (malo sina): 102710877
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Entry
102710877 CDS
T02995
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit C-like
KO
K07466
replication factor A1
Organism
obr
Oryza brachyantha (malo sina)
Pathway
obr03030
DNA replication
obr03420
Nucleotide excision repair
obr03430
Mismatch repair
obr03440
Homologous recombination
obr03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
obr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
102710877
03420 Nucleotide excision repair
102710877
03430 Mismatch repair
102710877
03440 Homologous recombination
102710877
03460 Fanconi anemia pathway
102710877
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
obr03000
]
102710877
03032 DNA replication proteins [BR:
obr03032
]
102710877
03400 DNA repair and recombination proteins [BR:
obr03400
]
102710877
Transcription factors [BR:
obr03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
102710877
DNA replication proteins [BR:
obr03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
102710877
DNA repair and recombination proteins [BR:
obr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
102710877
MMR (mismatch excision repair)
102710877
DSBR (double strand breaks repair)
HR (homologous recombination)
102710877
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
zf-CCHC
tRNA_anti-codon
DUF223
OB_MEIOB_N
zf-CCHC_2
Motif
Other DBs
NCBI-GeneID:
102710877
NCBI-ProteinID:
XP_040380009
UniProt:
J3M3A9
LinkDB
All DBs
Position
5:444507..449239
Genome browser
AA seq
896 aa
AA seq
DB search
MEPQLTPGAVQAIADHPDGAGTVQPVLQVVDVRPVTTKNAPPTPKPADRFRMMLSDGAHT
QQSMLATALNCLVKDGTLRPGTVVQLTDFMCNTIQGKRIIIVVKLDVLQNDCAIIGNPKH
YEPKGLTKEQDPNLQASAAQTSSGTYSGGASMLGSSMAPTVDPAASNRSYGGPYNSAQGM
LGSSIGQTVEPGPTNVSIGGPYRAISAQNTMNANLMWSTSQQSLVNPNQNQRFSGPASGG
GSGPPGNVYGQPARPSYQQPPSVNMNRGPAARNDSATRIIPIAALNPYQPKWTIKARVTA
KSDIRHWSNAKGSGTVFNFDLLDAQGGEIRAQCWKESVDKFYGQIEVGKVYLISRGTLKP
AAKKYNTLNHDYEMTLDAGLANLEVCSDDDNSIPRLQYNFRQISELENIDNETIVDLLGV
VTSVSPSATIMRKTGTETKRRTIQLKDLSGRSIEVTLWGNFCDVEGQQLQLQCDSGLNPV
VALKGARVSDFGGRSAGTISSTQLIINPDFPEVERLRQWFMTEGKTAPCISLSREISNMG
RADARRTIAQIKDDDLGRQEKADWITVKAAISHVGTDNFCYPACPKILSGGRQCGKKVIN
NGDGMWHCDRCDESVQNCEYRYLLRFQIQDHTGTTYVDVFQEAGEQVFCRKAEELFSIRN
VDQDDAQFAEIIEGVRWHQYLMKLRVKEETFNDETRLKCHLMKIEKLDPSKESNILLGAI
DSLLLDGSGSSPEGQSAPSPNAGFTDLVGGHSATTSSANQFGQLASVSAGMSAPLSATLN
MQTCSICGANGHSAQNCHVGADMGRQETSAVGGFTVSNHNSIGGNTSSGPCYKCNQPGHF
ARDCPAQSGLGPCYKCNKPGHFARDCPGQSAGVQHQTYGNSVSSRGYNRQSFVGGY
NT seq
2691 nt
NT seq
+upstream
nt +downstream
nt
atggagccgcagctgacgccgggcgcggtgcaggcgatagcggaccaccccgacggggcc
gggacggtccagccggtgctgcaggtggtggacgtccgccccgtcaccaccaagaacgcg
ccgccgacgcccaagcccgccgaccgcttccggatgatgctctccgacggcgcccacacg
cagcagtccatgctcgccaccgccctcaactgcctcgtcaaggacggcaccctccgcccc
ggcaccgtcgtccagctcaccgacttcatgtgcaacaccatccagggcaaaaggattatt
attgttgtgaaacttgatgttctgcaaaatgactgtgccataattgggaaccccaaacac
tatgagccaaagggtctaaccaaggagcaagaccctaacttacaggctagtgcggctcaa
actagtagtggaacctactctggtggtgcaagcatgttgggatcctccatggcaccaacg
gtggacccggccgctagcaatcgatcatatggtggaccctataatagtgctcaaggaatg
ttgggttcttctattggccagacagttgaacctggtcctacaaatgtctccattggtggc
ccttatcgtgcaatctcagcacagaacacaatgaatgccaacttgatgtggtcaacgtct
cagcagtccttggtgaaccctaatcaaaaccaaaggttttcaggtcctgcctcaggtgga
ggctctggccctcctggcaatgtttatgggcagcctgcacgtccttcatatcagcagcca
ccttcagtgaatatgaatagagggcctgctgccaggaatgactctgcaacccgtatcatc
cccattgctgcgctgaatccgtatcagcctaagtggacaatcaaggctagggtgactgca
aagtctgatatcaggcattggagcaatgccaaaggttcaggaacagttttcaactttgat
cttcttgatgcacaaggtggagaaattcgtgcgcaatgctggaaagaatcggttgataag
ttttatgggcaaattgaagttggtaaggtgtatttgatatctaggggaacattgaaaccc
gcggcaaagaagtacaacaccttgaaccatgattatgaaatgactctggatgccgggtta
gccaatcttgaggtttgctctgatgatgataacagcatccccaggctgcagtacaatttc
cggcagatcagtgaattagagaatatagataatgagaccattgtagatttacttggtgtc
gttacatcagttagcccttctgccacaattatgaggaagactggcactgaaaccaagaga
aggactattcaactgaaggacttatctggccggagcattgaagtaacattgtggggaaac
ttctgtgacgttgagggtcagcagttgcagttgcagtgtgattctggtttgaaccctgtg
gttgctttgaaaggtgcccgtgtgagtgattttggtggtagatcagcaggcacaatcagt
tcaacccagctgataataaacccagactttcctgaggttgaaaggctgaggcagtggttc
atgacagaaggaaaaactgccccttgcatttctttatctcgagaaatttctaacatgggc
cgggctgatgcccgcagaacaattgcacagatcaaggatgatgacttgggacgacaggag
aaggcagactggatcactgttaaggctgcaatttcacatgtgggtactgataatttttgt
tatccagcttgccccaagatcttgtccggtgggaggcaatgtggtaaaaaggtcataaat
aatggcgatgggatgtggcattgtgaccgatgtgatgagagtgttcaaaattgtgaatat
aggtacctgcttaggttccagatccaagaccacactggtactacctatgttgatgtgttc
caggaggctggtgagcaggttttttgtcgcaaggcagaagagcttttctcaataagaaat
gttgaccaagatgatgcacaatttgcagagatcatagaaggggtccggtggcatcaatat
ctaatgaaattgcgagtcaaggaagaaaccttcaatgatgagacgcggctgaaatgccac
cttatgaaaatcgaaaaactggacccctcgaaagagagcaatatccttcttggagcgatt
gacagccttttgctggatggatcaggctcaagcccagaggggcaaagtgctccttcccct
aacgctggtttcactgatctggtaggtggtcacagcgcgactacatctagtgcaaatcag
tttgggcagctagcaagtgtaagcgccgggatgtctgctccactatcagcaacactaaac
atgcagacatgcagcatttgtggagccaatgggcacagtgcgcagaactgccatgtgggt
gccgatatgggtaggcaggaaacatcagcagttggaggcttcacggttagtaatcacaac
tccattggtggtaacaccagctccggcccgtgttacaaatgtaaccagcctgggcacttt
gctagagactgtccagcgcagtcgggcctgggcccgtgttacaaatgtaacaagcctggg
cactttgctagagactgtccagggcagtctgctggtgtccagcaccagacatatgggaat
agtgtttcatcaaggggttacaataggcaatcctttgttgggggctactga
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