Oryza brachyantha (malo sina): 102711162
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Entry
102711162 CDS
T02995
Name
(RefSeq) pre-mRNA-processing-splicing factor 8A
KO
K12856
pre-mRNA-processing factor 8
Organism
obr
Oryza brachyantha (malo sina)
Pathway
obr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
obr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
102711162
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
obr03041
]
102711162
Spliceosome [BR:
obr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
102711162
Complex C
U5 SnRNP specific factors
102711162
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
102711162
NCBI-ProteinID:
XP_006656685
UniProt:
J3MBL8
LinkDB
All DBs
Position
6:complement(2356753..2366681)
Genome browser
AA seq
2360 aa
AA seq
DB search
MWSGGPPPPMGAAPPPPGTVGPGAGAPPPPAAGPPGGGGGKPLTPAELEAQLVEKARKWH
QLNSKRYGDKRKFGFVEAQKEDMPPEHVRKIIRDHGDMSSKKYRHDKRVYLGALKFVPHA
VYKLLENMPMPWEQVRHVKILYHITGAITFVNEIPWVVEPIYLAQWGTMWIMMRREKRDR
RHFKRMRFPPFDDEEPPLDYADNLLDVEPLEAIQLELDEEEDSAVHEWFYDHKPLVKTKL
INGPSYRKWHLSLPIMATLYRLAGQLLSDLIDRNYFYLFDMESFFTAKALNMCIPGGPKF
EPLYRDMEKGDEDWNEFNDINKLIIRQPLRTEYRIAFPHLYNNRPRKVKLGIYHTPMIMY
IKTEDPDLPAFYYDPLINPITSTNKVDRRERRTTEDEEDEDFCLPDGVEPLLKGTELYTD
TTAAGISLLFAPKPFNMRSGRTRRAEDIPLVSEWYKEHCPPAYPVKVRVSYQKLLKCYVL
NELHHRPPKAQKKKHLFRSLQATKFFQTTELDWAEAGLQVCKQGYNMLNLLIHRKNLNYL
HLDYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDANIQFRLGNVDAFQLAD
GLQYIFSHVGQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPMWRV
WLFFLRGIVPLLERWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDVLDA
MPEGIKQNKARTILQHLSEAWRCWKANIPWKVPGLPVPIENMILRYVKSKADWWTNVAHY
NRERIRRGATVDKTVCRKNLGRLTRLWLKAEQERQHNYLKDGPYVTPEEAVAIYTTTVHW
LESRKFSPIPFPPLSYKHDTKLLILALERLKESYSVAVRLNQLQREELGLIEQAYDNPHE
ALSRIKRHLLTQRAFKEVGIEFMDLYSYLIPVYEIEPLEKITDAYLDQYLWYEGDKRHLF
PNWVKPADSEPPPLLVYKWCQGINNLQDVWDTSDGQCVVMLQTKFEKFFEKIDLTLLNRL
LRLVLDHNIADYVTAKNNVVLSYKDMSHTNSYGLIRGLQFASFVVQYYGLVLDLLLLGLT
RASELAGPPQMPNEFLTYADTKVETRHPIRLYSRYIDKVHIMFRFTHEEARDLIQRYLTE
HPDPNNENMVGYNNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENSFVS
VYSKDNPNLLFSMCGFEVRILPKIRMTQEAFSNTKDGVWNLQNEQTKERTAIAFLRVDDE
HMKVFENRVRQILMSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCENKI
QTRIKIGLNSKMPSRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSKQTDVGVTHFRS
GMSHDEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAQSQNRRLTLEDLEDSWDRG
IPRINTLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDVI
QALGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRRFT
LWWSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKIHESVVMDLCQ
VLDQELDALEIETVQKETIHPRKSYKMNSSCADILLFAAHRWQMSKPSLVSESKDVFDQK
ASNKYWIDVQLRWGDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGIDLAYNLHSAF
GNWFPGSKPLLQQAMNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIFSNQ
IIWFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKRLGQ
LAKWKTAEEVAALVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQA
CLKIEKFGDLILKATEPQMVLYNIYDDWLKSISSFTAFSRIVLILRALHVNNEKAKMLLK
PDKTIVTEPHHIWPTLTDEQWLKVECALRDLILSDYAKKNNVNTSALTQSEIRDIILGAE
IAPPSQQRQQIAEIEKQSRETTQLTAVTTRTTNVHGDELIITTTSPYEQQAFASKTDWRV
RAISATNLYLRVNHIYVNSDDIKETGYTYIMPKNILKKFICIADLRTQISGFLYGLSPQD
NPQVKEIRCIAIPPQHGTHQMVTLPANLPEHEFLNDLEPLGWMHTQPNEAPQLSPQDLTS
HAKILENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRSNKDTGSNPHGYLPTH
YEKVQMLLSDRFLGFYMVPDNVPWNFNFMGVKHDPLMKYNMKLGTPRDFYHEDHRPTHFL
EFSNIDEGDVAEGDREDTFS
NT seq
7083 nt
NT seq
+upstream
nt +downstream
nt
atgtggagcggcgggccgcccccgccgatgggggccgcgccgcctcccccgggcacggtc
ggcccgggcgcgggcgctccgccgccgccggccgcgggcccgcccggcggcggcggcggc
aagccgctgacgccggcggagctcgaggcgcagctggtggagaaggcgaggaagtggcac
cagctcaactccaagcggtacggcgacaagcgcaagttcgggttcgtcgaggcgcagaag
gaggacatgccgcccgagcacgtccggaaaatcatcagggaccatggcgacatgtcttca
aaaaagtacaggcatgacaagcgtgtatatcttggagcactcaaatttgtacctcatgct
gtttacaagctactggaaaatatgccaatgccatgggaacaggttcggcatgtaaagatc
ctgtaccatatcactggtgcgataacctttgtaaatgagatcccatgggtagttgagccc
atttacctcgcacagtggggtacaatgtggatcatgatgaggagggaaaagagagataga
cgacatttcaagagaatgcgctttcctccatttgatgatgaggaacctcccctggactat
gctgataatttgctggacgttgaacctctggaggctatacagttggagttggatgaggag
gaagattcagctgtgcatgaatggttttatgaccataagccacttgtgaagacaaagctt
ataaatggccccagttacaggaagtggcatctatcgcttcccataatggcgacactctat
cgtcttgctggtcaacttctgtccgatttgattgatcgtaactatttctatttgtttgac
atggagtccttctttactgccaaagcactgaatatgtgtatcccaggaggtccaaagttt
gagccactgtaccgtgatatggaaaagggggatgaggactggaatgagtttaacgacatc
aacaaactcatcattcgtcaaccactcaggactgagtacagaattgctttcccacacttg
tacaataataggccaaggaaagtgaagcttgggatatatcatactccaatgatcatgtat
atcaagacagaggacccagacttgcctgcattttactatgatcccctgataaatcctata
acctcgactaacaaggttgatcgtcgggagaggagaacaactgaagacgaagaagacgaa
gacttctgtctccctgatggtgtggagcccctcttgaaaggaacagaactttatactgat
acaacagcagctggcatttcattactctttgctccaaagccttttaatatgagatctggt
aggactcgtcgtgctgaagacatccctcttgtatctgagtggtacaaggagcactgccca
ccagcttatccagtgaaggtgcgtgtcagctatcagaaactactgaagtgttatgtgctc
aatgagttacatcataggcctcccaaggcacagaagaagaagcatctgttccgttcgctc
caagcgacaaagttttttcaaacaacagagcttgactgggcagaagcaggtctgcaagtt
tgcaaacagggttacaatatgttgaacttgttaatccacaggaagaaccttaactacctt
cacttggactacaacttcaatttgaaacctgtaaagactctcacaacaaaggaaaggaaa
aaatctcggtttggaaatgcattccatttatgccgtgagatattacgtcttactaagttg
gttgttgatgcaaatatccagttccgtttgggaaatgttgatgctttccaattagcagat
ggtttgcaatacatattctctcatgttggccagttgactggtatgtaccgttacaagtat
cgtctgatgcggcaaatcaggatgtgcaaagatctgaagcacttgatatactatcgtttc
aatactggtcctgtgggaaaaggacctggttgtggattctgggctccaatgtggagggtg
tggctgttttttctgcggggtattgtgccactgcttgaaagatggttaggtaatttactg
gccaggcagtttgaaggtcgtcattcaaaaggagttgctaaaactgtaacgaagcaacgt
gttgaatctcactttgatctagagcttcgagctgctgttatgcatgatgtccttgatgct
atgccagagggcatcaagcaaaacaaggcaaggactatactgcagcatcttagcgaggca
tggcggtgctggaaggcaaatatcccgtggaaggtccctggtctgcctgttcctattgaa
aacatgatacttcgttatgtgaagtccaaggctgattggtggactaatgttgctcactac
aatcgtgaacgtattaggcgtggtgcaacggttgataagactgtgtgccgcaagaatctt
ggaaggttaacacgtctgtggctgaaggcagaacaggaaagacaacacaactacttgaaa
gatgggccatatgtgacacctgaagaggcagttgcgatttacacaacaacagttcattgg
ctagaatcaaggaagttctcacctattccttttcctccactttcttataagcatgacacc
aaactacttatactggctctggaaaggctaaaggagtcctacagcgtggcagtaaggtta
aatcaactgcagcgggaggaacttggcttgatagaacaagcatatgataatcctcatgag
gcattgtccaggataaagcgacatctcctaacccagcgtgcttttaaagaagttggcatt
gagtttatggacctgtacagctacctgatcccggtatatgaaattgagcctcttgagaaa
atcactgatgcttaccttgaccagtacttgtggtatgagggagacaagcgacacctattc
ccgaactgggtcaagcctgctgattcagaaccaccacctctgcttgtttacaaatggtgc
caaggtataaataatctacaggatgtatgggacactagtgatgggcagtgtgttgtgatg
ctgcagacaaaatttgagaagttctttgaaaaaattgatctgacactgttgaacagactt
ttgcgattggtcttggaccataatattgctgattatgtcactgcaaagaacaatgttgtg
ttgtcttacaaagatatgagtcatacaaattcttatggtctcattcggggtctacagttt
gcatcatttgttgtgcagtactatgggcttgtgctggatctcctgctgcttggtttaaca
cgtgcaagtgagcttgctgggccacctcagatgcctaatgagttccttacatatgctgat
accaaagttgagacaaggcatcctatccggctgtattctcggtatattgataaggtgcat
ataatgttcagattcactcacgaggaagcacgtgatttgattcagcgttatttgacagag
catcctgatcctaataatgaaaatatggtcggttacaacaacaaaaaatgttggcctaga
gatgcaagaatgaggctcatgaagcatgatgtaaatcttggaagaagtgtcttttgggac
atgaagaaccgcctcccaaggagcatcacaacgttagaatgggagaacagcttcgtctct
gtttacagcaaggacaaccctaacctgctgtttagcatgtgcgggtttgaggttcgtata
ctaccaaagatacggatgactcaagaagcatttagtaacaccaaagatggagtctggaat
ctgcagaatgagcaaacaaaagaaaggacagctattgcctttctacgtgttgatgatgag
catatgaaagtgtttgagaaccgtgtcaggcaaatccttatgtcctctgggtctactaca
ttcaccaagattgttaataagtggaatacggctctcattggtcttatgacatatttccgt
gaagcaactgttcacacacaggagctcttggatttacttgtcaaatgtgaaaacaagatc
caaactcgcataaagattggcctgaactcaaaaatgcctagcaggtttccacctgttatc
ttctatacacccaaggaaattggaggcctgggaatgctatcgatgggtcacattcttata
ccacagagtgatctcaggtacagcaaacagacagatgttggtgtgacacattttcggagt
ggtatgagccatgacgaggaccagcttatccctaacttatatcgctacattcagccctgg
gagagtgagtttattgattcacagcgtgtttgggctgagtatgctttgaagaggcaggaa
gcacaatcacagaacagacggttaacacttgaggatcttgaagattcatgggatagaggt
attcctcgtatcaacactcttttccaaaaagaccgtcacactttggcatatgataaagga
tggagagtgagaacagactttaagcagtaccaagtgctcaaacaaaatccattctggtgg
acacatcagaggcatgatgggaagttatggaacttaaacaactataggactgatgtaatc
caagctcttggtggtgtagagggtattttggaacacaccttgtttaaaggaacatatttc
cctacttgggagggtctgttttgggagaaagcatcaggttttgaggagtctatgaaatac
aagaagctgactaatgcacaacgttctggtctcaatcagatacctaaccgaagatttacc
ctgtggtggtcaccaaccatcaaccgtgcaaatgtatatgttggtttccaggttcagcta
gatcttactgggattttcatgcacgggaaaattccaaccctgaagatttctctaatccag
atcttccgtgcacatctgtggcagaagatccatgaaagtgttgttatggatctttgccaa
gttttggatcaagagctggatgcactggagattgagacggtgcagaaagagacaatacat
ccaaggaagagttacaagatgaacagctcctgtgcagatatcctgctttttgctgcacat
aggtggcagatgtccaaaccaagcttagtttctgagtcaaaggatgtctttgatcagaaa
gctagtaacaagtattggattgatgtgcaactacgctggggagactacgattcgcatgac
attgaacgttatacaagggccaagttcatggactacactactgacaatatgtccatctat
ccatctccaactggagtgatgattggaattgatctagcatataatttgcactctgctttt
ggcaattggttccctgggtcaaagcccctccttcagcaagcaatgaacaagataatgaag
tcaaatcctgctctgtatgtgctgagggagagaataaggaagggtctacagttgtattct
tcggaacccactgagccatatctgtcttcacagaactatggagagatattcagcaatcag
atcatatggtttgtggacgatacaaatgtctatcgagttaccattcacaaaacatttgag
ggtaacttgaccactaaaccaatcaacggtgctattttcatttttaatccaagaactggc
caactatttttgaaggtgatccatacaagtgtatgggctggacaaaagcgtcttggacaa
cttgccaagtggaaaacagctgaagaggttgctgcattagttcgttctcttcctgtagaa
gagcagccaaagcaaatcattgtgacaaggaagggtatgctggatcctttggaggtccat
ctgcttgacttccctaacattgttatcaagggcagtgagttgcagctgccattccaagct
tgtttgaagattgagaagtttggtgatcttattctcaaagctacagaaccccagatggtt
ctatacaatatatatgatgattggttgaaaagtatctcatcattcactgctttctctcgg
attgtgcttatattacgtgctcttcatgtcaataatgagaaggcaaagatgctgctcaaa
cctgacaagaccattgttacggaaccacatcatatttggccaaccttgacggatgagcaa
tggctgaaggttgaatgtgcactcagggacctcattctatctgattatgcgaagaaaaac
aatgttaacacttctgcactgacgcaatctgaaattcgtgatattatacttggtgctgaa
atagctccaccatcacagcagaggcaacagattgctgaaattgagaaacagtctagagag
acgactcagttgactgcagttacaacaaggacgactaatgtgcatggagatgagctcatc
atcaccacaactagtccatatgagcagcaagcatttgcatcaaagactgattggcgtgtc
agggccatctctgccacaaacttgtatcttcgtgtcaatcacatttatgttaactcggat
gatataaaggagactggctacacttacattatgccaaagaatatattgaagaagttcata
tgcatagcagatttaaggacacagatttcaggttttctatatgggctgagtccgcaggat
aatccccaagttaaggaaattagatgcatagctattcctccacagcatgggactcatcag
atggtgacactgcctgcaaaccttcctgagcacgagttccttaatgatttggagccactg
ggatggatgcatacccagccaaacgaagctcctcagctgtcaccacaggatttgacttca
catgccaagattttggagaacaacaagcaatgggatggtgagaagtgcatcattttgaca
tgcagctttactccaggatcttgttcgttgaccgcgtacaagttgacgccgagtggttat
gagtggggtcgtagcaacaaggacaccggaagcaacccacatggatatctcccaactcac
tatgagaaggtccagatgcttctcagtgaccgattcctgggattctacatggtgccggat
aacgtcccctggaacttcaacttcatgggggtgaagcatgacccgctgatgaagtacaac
atgaagcttggcacgccccgggacttctaccatgaggaccatcggccaactcatttcctt
gagttcagcaacattgacgagggcgatgtcgcggaaggtgatagggaggacaccttctcg
tag
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integrated database retrieval system
