Oryza brachyantha (malo sina): 102711273
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Entry
102711273 CDS
T02995
Name
(RefSeq) transcription initiation factor TFIID subunit 5-like isoform X2
KO
K03130
transcription initiation factor TFIID subunit 5
Organism
obr
Oryza brachyantha (malo sina)
Pathway
obr03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
obr00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
102711273
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
obr03021
]
102711273
03036 Chromosome and associated proteins [BR:
obr03036
]
102711273
Transcription machinery [BR:
obr03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
102711273
Coactivators
SAGA/TFTC/STAGA complex
102711273
Chromosome and associated proteins [BR:
obr03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
PCAF complex
102711273
STAGA complex
102711273
TFTC complex
102711273
SAGA complex
102711273
SLIK complex
102711273
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
TFIID_NTD2
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_CAF1B_HIR1
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
Beta-prop_EML
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_IFT122_1st
WD40_MABP1-WDR62_1st
Beta-prop_IFT140_1st
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
Beta-prop_SCAP
Beta-prop_EIPR1
Beta-prop_WDR19_1st
Beta-prop_DCAF4
Beta-prop_Vps41
Beta-prop_HPS5
WD40_RFWD3
Beta-prop_WDR35_TULP_N
Beta-prop_SPT8
Beta-prop_Nup120_160
RecX_HTH3
WEF-hand
Motif
Other DBs
NCBI-GeneID:
102711273
NCBI-ProteinID:
XP_006657544
UniProt:
J3MJC8
LinkDB
All DBs
Position
7:3613730..3623186
Genome browser
AA seq
657 aa
AA seq
DB search
MEDEEMEKKVQQYLQRKGFRLAELALHEERNRLSTASSSSFSEAALSRSENDPARYYDGY
SKLRTWAYSSLDQYKHELLRILYPLFIHCFMDLVAEGHTQEAHSFFHTFREDHEHSRDLK
KLEGILSPSHLEEMEVARSLRENKFRIKLCGSSYDLLLQYLHKTQALVLLGIINERITFE
VSSGKSPLIADDSDAAVLIGTSKDLRKQINQKEVHWGMLEDSLEERMEKAISDSDKTETE
SKDADTEDNKKRSLEGGKQAGLHKKIKKDKLVGAAGKNMKSETSMVSVAPRVKPELTLPV
TSVEVEQSILEDLRNRAHLNSLALPSVSFYTFLNTHNGLNCSSISHDGSLVVGGFADSSV
KVWDMSKIGQPPKTSCSQGENGHSQGERVSTSDEGRKSYTLFQGHSGQVYSATFSPIGDF
LLSSSSDSTIRLWSTKLNANLVCYKGHNYPVWDVQFSPVGHYFASASHDRTARIWSMDKI
QPLRIMAGHLSDVDCVQWHVNCKYIATGSSDRTVRLWDVQTGECIRMFIGHRSMVLSLAM
SPNGRYMASGDEDGTIMVWDISSGRYISPPVGHNSCVWSLAYSCEGALLASGSADCTVKL
WDVSSSTKALKMDDTKGGSANRLRMLKVLPTKSTPVYTLQFSRRNLLFAAGALSRGS
NT seq
1974 nt
NT seq
+upstream
nt +downstream
nt
atggaggacgaggagatggagaagaaggtgcagcagtacctgcagcgcaagggcttccgc
ctcgcggagctcgcgctgcacgaggagcgcaaccgcctatccaccgcctcctcctcctcc
ttctcagaggccgcgctctccaggtccgaaaacgatccagcgaggtactatgatggctac
agtaaactaagaacatgggcatacagttctcttgatcaatacaagcatgaattactccgc
attctttatccactgtttatccactgctttatggatctagtggcagaggggcatacgcag
gaagctcactcatttttccacacatttcgtgaagaccatgagcattcgagggatctcaag
aagctggaaggcattctttctccttcacacttggaggaaatggaagtggctcgatcttta
agggaaaataaattcagaattaagctatgtgggtcttcatatgacttgcttctccagtat
ctccacaaaacacaagcccttgtgttgcttggaataatcaatgaacgcataacttttgaa
gtatcctctgggaagtctccattaatcgctgatgactcagatgcagctgttctgattgga
actagcaaggacttgaggaaacagataaatcagaaggaggtgcattgggggatgcttgaa
gattcacttgaagaacgaatggagaaggcaatttcagattctgataaaactgaaacagaa
agcaaagatgcagacacagaagacaacaagaaaagatccttagaaggtggaaagcaggct
ggtttgcataaaaagatcaaaaaggacaagcttgtaggagccgcagggaaaaacatgaaa
tctgaaactagcatggtttctgtggcaccacgtgttaaaccagagctaacacttccagtg
acatctgttgaagttgagcagtcaattcttgaggacttgcgaaaccgtgcacacttgaat
agcttggcattgccatctgtcagcttctacacattccttaatacacataatgggttaaat
tgctcatcgatttcgcatgatggttcattggtcgtcggtggattcgcggactcatcagtg
aaggtttgggatatgtcaaagattggccagcctcccaaaacatcttgttcacaaggagag
aatgggcattcccagggtgagcgtgtatcgacatcagatgaagggagaaaatcctataca
ttattccaaggtcattctggacaagtttattctgccacgtttagtccaattggggacttc
ctcttgtcatcatcctctgactcaacaatccgcttatggagtaccaagctgaacgcgaat
cttgtttgctacaaaggacacaactaccctgtttgggatgtccaatttagtccagttggt
cattactttgctagtgcttcgcatgacaggacagctagaatttggtcaatggataaaatc
cagcctttgagaataatggctgggcatttatctgatgttgattgtgtgcaatggcacgtc
aactgcaaatacattgccactggctctagtgacagaactgtaagactatgggatgttcaa
accggtgaatgtataaggatgtttattggccatagaagtatggttttatcattggcaatg
tctcctaatgggcgatacatggcttctggagatgaagatggaaccatcatggtgtgggat
atatcttctggtcgttacatctcaccaccagtgggacacaactcttgtgtctggtcactt
gcatacagctgtgaaggggcattacttgcatctggatcagctgactgcactgtgaaacta
tgggatgtctcctccagcacaaaggctcttaagatggatgataccaaaggtggttcagct
aaccgattgaggatgctaaaggtcctccctacaaaatcaacccctgtttatactctgcag
ttttctcggaggaatcttttatttgcggctggtgctctctcgcgtggctcctaa
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