Oryza brachyantha (malo sina): 102711439
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Entry
102711439 CDS
T02995
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 52A-like
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
obr
Oryza brachyantha (malo sina)
Brite
KEGG Orthology (KO) [BR:
obr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
obr03019
]
102711439
03041 Spliceosome [BR:
obr03041
]
102711439
03036 Chromosome and associated proteins [BR:
obr03036
]
102711439
Enzymes [BR:
obr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
102711439
Messenger RNA biogenesis [BR:
obr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
102711439
mRNA cycle factors
Common to processing body (P body) and stress granule
102711439
Spliceosome [BR:
obr03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
102711439
Chromosome and associated proteins [BR:
obr03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
102711439
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DUF6830
CMS1
Motif
Other DBs
NCBI-GeneID:
102711439
NCBI-ProteinID:
XP_040381279
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All DBs
Position
6:16304559..16311676
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AA seq
602 aa
AA seq
DB search
MAAAAAVENAVEAGGDLDGGAWSTVSRSSYSSTAVGGGVVAAEKVAEVAEGLAGLEIGDR
RLDKYDIPVEVSGEGVPPPAVGFEGAGLVEAVLRNVARCGYESPTPVQRYAIPIALAGRD
LMACAQTGSGKTAAFCLPVVSGLLAAGGSGIGPRERSSFNRAAAKPRALVLAPTRELAAQ
INEEAKKFSLQTGLRVVVAYGGTPMYNQLRDLERGADILVATPGRLVDMVERSRLSLEAI
KYLVMDEADRMLDMGFEPQIRMIVERMNMPRKPMRQTMLFSATFPPEIQRLALDFLSNYI
FITVGRVGSSTDLIMQKVELLSDGEKRGYLLDLLQRQSVGVANSKQPLTLVFVETKREAD
SLRYWLYSKGFPTTSIHGGRTQQERESALRSFKTGHTPIMVATDVASRGLDVPNVAHVIN
YDLPKSIEDYVHRIGRTGRAGMAGSATAFFTESDHSLAKGLLELMTEAKQDVPDWLVQYA
ARPHHGGSSCGGRARRSGGSGGRDFRQGSDYPDYTGGGDSYSRGGSFSGGRGGSGRGDRG
GRGYSGGGRGDRGGGYSGGGRGDRGGGGGYSGGDSYRGSAPPPRYYPSYPMGTADINASG
WN
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atggcggcagcggcggcggtggagaatgcggtggaggccggcggcgacctggatggtggt
gcgtggtccaccgtctcccgctcctcctactcctcgacggccgtcggcggcggggtggtg
gcagcggagaaggtggcggaggtcgccgaggggctggcggggctcgagatcggggaccgg
aggctggacaagtacgacatcccggtggaggtgagcggcgagggggtgcccccgcccgcg
gtggggttcgagggggccgggctggtggaggccgtgctgcggaacgtggcgaggtgcggg
tacgagagccccacgccggtgcagcggtacgcgataccgatcgcgctggccggcagggac
ctgatggcgtgcgcgcagacggggtccgggaagacggctgcgttctgcctccccgtggtg
agcggccttctcgcggcgggagggagcgggatcgggccccgggagaggtcgtcgttcaac
cgcgccgccgcgaagccgcgcgctctcgtgctcgcgcccacgagggagctcgccgcgcag
attaatgaggaggccaagaagttctctttacaaactggactcagagttgttgtggcctat
ggaggaactccaatgtataaccagctgcgtgatctagagaggggcgctgatattctcgtt
gctacacctggtcgccttgtggacatggttgaaagatcaagattgtctcttgaggcaatc
aagtacctggtaatggatgaggctgacaggatgttggatatgggttttgagcctcagata
aggatgattgttgaaaggatgaacatgccaagaaagcctatgagacaaactatgcttttc
agtgcaaccttcccaccagagatacagagactggctttggactttttgtcaaactacata
tttatcactgttgggagagtggggtcgagtactgacctaattatgcagaaagtcgaactc
ctctctgatggagagaaacgaggctacctgcttgatcttttgcagaggcaatctgtcggt
gtggctaacagtaagcaacctctaacgttggtatttgtggagacaaaacgggaggctgac
tcactgcgttactggttgtacagcaaaggtttccctacaacatcaatccatggtggcagg
acacagcaggagagggagagtgcactgagatcctttaagactggccacactcctataatg
gtcgcaactgatgtagcctcacggggcctggacgtcccaaacgttgctcatgtgatcaac
tacgatcttcccaagagcatagaggactatgtccacaggatcggaaggactgggagagct
gggatggctggatcggccaccgctttcttcactgagtctgaccactccctggcgaagggc
ttgctcgagctgatgaccgaggcaaagcaggacgtgcctgattggcttgtgcagtatgcc
gcgaggccacaccatggaggctcaagctgcggtggaagagcacggaggtccggtggctct
ggcggcagggattttcgtcagggcagtgactatcctgactacactggcggtggtgacagc
tactcacgtggtggcagcttctcaggcggtcgtggtggcagcggtcgtggtgatcgcggt
ggccgcggctactcaggtggcggtcgtggtgatcgcggcggcggctactcaggcggcggt
cgaggtgatcgcggcggcggcggcggctactcgggtggagactcctacagaggaagtgct
ccacccccgcgttactacccttcttacccgatgggcactgccgacatcaacgcctccggc
tggaactaa
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