Oryza brachyantha (malo sina): 102711914
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Entry
102711914 CDS
T02995
Name
(RefSeq) exosome complex component RRP41 homolog isoform X1
KO
K11600
exosome complex component RRP41
Organism
obr
Oryza brachyantha (malo sina)
Pathway
obr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
obr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
102711914
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
obr03019
]
102711914
Messenger RNA biogenesis [BR:
obr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
102711914
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
102711914
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
102711914
NCBI-ProteinID:
XP_040383804
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All DBs
Position
9:3695084..3699381
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AA seq
242 aa
AA seq
DB search
MEHVNPLTGFRVDGRRPNEMRQLKGEVGVVARADGSAMFEMGNTRVIAAVYGPREVQNKG
QQVSSKEALVRCEYRMADFSTGDRRRKPKGDRRSTEISLVIRQTMEASILTHLMPRSQIN
IFVQVLQADGGTRAACINAATLALADAGIPMRDIVTSCSAGYLCSTPLLDLNYIEDSAGG
PDVTVGILAKMDKVTLLQMDAKLPMDTFETVMELAIEGCKAIAKYIREVLLENTKRLECQ
RC
NT seq
729 nt
NT seq
+upstream
nt +downstream
nt
atggagcacgtgaaccctctcaccggcttccgcgtcgacggccggcgccccaacgagatg
cggcagctcaagggtgaggtgggcgtcgttgctagggccgacgggtcggcaatgttcgag
atgggcaacaccagggttattgccgctgtctacggccctcgagaggtccaaaacaaaggt
caacaagtcagcagcaaagaggctttggtgcgttgtgagtataggatggcagattttagt
actggggatcgaaggagaaagccaaagggtgacaggcgatcaacagaaatttcacttgtt
atccggcaaacaatggaggcaagcattttaacacatttaatgccacgttcacagattaat
atatttgtccaagttcttcaagctgatggtggtacaagggctgcatgcatcaatgctgca
acactagcacttgcagatgctgggattcccatgcgagacatcgttacatcttgcagtgct
ggttatctgtgttctactcctttgctcgatctaaattatatagaagacagcgctggaggt
ccagatgtcactgttggcattcttgcaaagatggacaaagttactcttctgcagatggat
gcaaaattaccaatggatacatttgaaactgtaatggaacttgcaattgaaggctgcaaa
gctattgcaaaatacatccgagaggtgctattggagaacacaaaacggctggagtgccag
cgttgttag
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