Oryza brachyantha (malo sina): 102711984
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Entry
102711984 CDS
T02995
Name
(RefSeq) U3 small nucleolar RNA-associated protein 21 homolog
KO
K14554
U3 small nucleolar RNA-associated protein 21
Organism
obr
Oryza brachyantha (malo sina)
Pathway
obr03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
obr00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
102711984
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
obr03009
]
102711984
Ribosome biogenesis [BR:
obr03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
102711984
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR36-Utp21_1st
Utp21
Beta-prop_WDR3_1st
Beta-prop_WDR5
WD40_Prp19
WD40
WD40_WDHD1_1st
Beta-prop_THOC3
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
Beta-prop_WDR3_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
WD40_Gbeta
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
EIF3I
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_Aladin
Beta-prop_RIG_2nd
Beta-prop_IFT140_1st
WDR90_beta-prop_4th
Beta-prop_HPS5
Beta-prop_Vps41
Beta-prop_WDR41
WD40_MABP1-WDR62_1st
Beta-prop_DCAF4
Beta-prop_VPS8
Beta-prop_IFT122_1st
Beta-prop_SPT8
Beta-prop_WDR19_1st
Beta-prop_EIPR1
Beta-prop_ACSF4
NBCH_WD40
PEP5_VPS11_N
Nucleoporin_N
Beta-prop_SCAP
WD40_RFWD3
VPS8_N
Motif
Other DBs
NCBI-GeneID:
102711984
NCBI-ProteinID:
XP_006656295
UniProt:
J3MG82
LinkDB
All DBs
Position
6:18155371..18163849
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AA seq
904 aa
AA seq
DB search
MGIFEPFRAIGYITAGGVPFSVQRLGTETFVTVSVGKAFHVYNCAKLNLVLCGPQLPKKI
RALASYKDYTFAAYGSDIAVFKRTDQVVTWSRHEEKVNMLYLFGEYILSADIEGNVFIWS
FRGAEPNSEPVGNISLGDKFTPTCIMHPDTYLNKVIIGSEEGPLQLWNISTKKKLYEFKG
WNSSVCSCVSSPALDVIAVGCSDGTIHVHNIRYDEELMSFNHQIRGAVTALSFRTDGQPL
LASGGSSGVISLWNLEKRRLHSVIREAHDASIVSLHFFANEPILMSSASDNSIKMWIFDT
NDGDARLLRFRSGHSAPPRCIRFYGNGKCILSAGQDRAFRLFSVVQDQQSRELSQRHVSK
RAKKLRLKEEDIKLKPVIAFDCAEIRARDWCNVVTCHTDTAQAYVWRLQNFVIGEHVLTP
SSGSKSPIKACAISACGNFTFLGTEGGWIEKFNLQSGISRGSYIDTLLAIKRAHDSEVVG
LACDATNGSLISAGYGGDIKVWDFKSCKLKSRLDIGKSVTKIAYHRANGILATVADDMVL
ILFDTVAMKMVRKFEGHTDRVTDLCFSEDGKWLISSSMDGTLRIWDISLARQIDAMHVDV
SITSLSMSPNMDVLATTHVDQNGVYLWVNQALFSPSINVDNYASGKHVRNVLLPTVSSTE
KSEEEPIHISEDSKESQIKSYIIRDHQIPNLITLSLLPKSQWQSLTNLDIIKVRNKPIEP
PKKPEKAPFFLPTVPSLSGEILFEPAANSKETDNSTENTSHKKMADLSSHFSRLLQSCGD
TKNYSPFTDYLKGLSPSSLDMELRVLQIIDDDSPENLKERPELHSISLLLDYFIHELSCR
NNFEFVQAVLKLFLKIHGETIRCHSILQDKVKKLLDVQSLVWQMIDKMFQSTRCMVTFLS
NSQF
NT seq
2715 nt
NT seq
+upstream
nt +downstream
nt
atggggatcttcgagccgttccgcgccatcgggtacatcacggcgggcggcgtgcccttc
tccgtgcagcgcctcggcaccgagaccttcgtcaccgtcagcgtcggcaaggccttccac
gtctacaactgtgctaaattgaatttggtcctttgtggacctcaattacccaagaagatc
cgtgcccttgcatcctacaaggattacacatttgctgcatatggaagtgatattgctgtt
ttcaaacgaactgatcaggtggttacttggagcagacatgaagaaaaggtcaatatgtta
tacctgtttggagaatacattctaagtgcagatattgaaggcaatgtatttatatggtcc
ttcagaggagcagagccaaacagtgagcctgttgggaatatatcattgggagacaagttt
acaccaacttgcattatgcatcctgatacttatctaaacaaggtcatcattggtagtgaa
gaaggccccttgcagctttggaatatcagcaccaagaaaaaactttatgagtttaagggt
tggaactcatcagtatgttcttgtgtttcttcacctgccctggatgtaattgcagtcgga
tgttctgatggaacaattcatgttcataatatacgatatgatgaagagttgatgtctttc
aatcatcaaattcgtggtgctgtaactgcactgtcatttcgaacagatgggcaacctctt
ctggcctctggaggatcatcaggtgttattagtctatggaatcttgagaaaaggcgcttg
cattctgttattcgggaggcccatgatgcctctatagtttcacttcatttttttgcaaat
gaaccgattctgatgagctccgcttctgacaattcaataaaaatgtggatatttgatact
aatgatggagatgcccgtctgttgcgatttcgtagtggccatagtgctccaccacggtgc
ataagattctatggaaatggaaaatgcatcttatccgctggtcaagatcgtgcctttcgc
cttttttcagttgtccaggatcaacaaagcagagagctttctcagcggcatgtgtcaaaa
agggcaaaaaagcttagattaaaggaggaagatatcaagttgaaaccagttattgcattt
gattgcgctgagatacgcgcacgtgattggtgtaacgttgttacctgccacacggatact
gcacaagcatatgtatggcgcctacaaaactttgttattggtgagcatgttctgacacca
tcatcaggcagcaagtcaccaattaaggcttgtgcaataagcgcatgtggaaattttact
ttcttgggcactgaaggtggttggatcgaaaaattcaacctgcaatcagggattagtcgt
ggcagttatattgatactttgttggcaattaaacgtgcacatgacagtgaagttgttgga
ttagcttgtgacgctacaaatggctctcttattagtgctggatatggtggtgatattaag
gtttgggattttaaaagttgcaagctaaaatcgagattggatattggtaaatctgtcacc
aaaattgcatatcaccgggccaatggtattctcgctactgtagcagatgacatggtgctt
atattatttgatacagtagccatgaaaatggtccgtaaatttgaaggccatacggaccgt
gttactgatttgtgtttcagtgaggatggaaaatggctcatctcatctagtatggatggg
actcttaggatatgggatatcagtttagcaaggcaaattgatgcaatgcatgtggatgta
tctataacgtctctttccatgtctcctaatatggatgtgttggcgaccactcatgttgat
caaaatggtgtctacctttgggttaatcaagctttgttctctccgtcgataaatgttgat
aattatgcaagtggtaaacatgtcagaaatgtgctgttgcccactgtttcatcaacagaa
aaatctgaggaagaacccatccatatttcagaagattcaaaagaaagtcaaattaaatct
tatatcataagggatcaccaaatacccaatctgattaccctctctttgcttcccaagagt
caatggcaaagtttaacaaatcttgacataataaaggttcggaataaaccaattgagcca
ccaaagaaacctgagaaggcgccttttttcttgcccacagttccatccctatcgggggag
atattgtttgagcctgctgcaaacagtaaagaaacagacaacagtactgagaacacaagt
cacaaaaaaatggctgacctctcctctcactttagtcggctgttacaatcctgtggggat
acaaagaattattcaccatttactgactacctgaagggcttgtcaccatcgtctttagat
atggagctacgggtgctacagataatcgatgatgatagtccagaaaatttgaaggagaga
cctgaacttcactccatttcattgttgttggattacttcatacatgagctttcctgcaga
aataactttgagtttgttcaggctgttctcaaattgtttttgaagatacatggtgaaaca
atacggtgtcactcaattcttcaggacaaagtgaagaagcttctagatgtccagagctta
gtttggcagatgatagacaaaatgtttcagagtacacgatgcatggttacattcctcagc
aactcacagttctag
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