Oryza brachyantha (malo sina): 102712572
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Entry
102712572 CDS
T02995
Name
(RefSeq) uncharacterized ATP-dependent helicase C29A10.10c-like
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
obr
Oryza brachyantha (malo sina)
Brite
KEGG Orthology (KO) [BR:
obr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
obr03021
]
102712572
Enzymes [BR:
obr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
102712572
5.6.2.5 RNA 5'-3' helicase
102712572
Transcription machinery [BR:
obr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
102712572
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
AAA_30
AAA_19
UvrD_C_2
AAA_16
Motif
Other DBs
NCBI-GeneID:
102712572
NCBI-ProteinID:
XP_040384120
LinkDB
All DBs
Position
10:complement(743487..753146)
Genome browser
AA seq
1355 aa
AA seq
DB search
MGSRGRMLFDLNELPTEAEEEEAAVVVSQPQKTLPVPTAGPSLFPQQEVTQSQGILNNNA
FKHASSGSGFQPFVRSKDSQITKEPIKAEGSLTASVATTSMVTNDVGKLIEPSNQISQAA
EREEGEWSDADVASDTAGSSLSNKEESSGTATTQVKRDFQVSEPTAVKSGDMNKDEAAAE
PSDTEMVDAPKDQVVRGPTGLESTKNLENKGNQPGDDSDPSNKSKDVRGVEANYALRFAS
NPAKRPKLDEHKEAMLGKKRARQTVFINVEDAKQAGTMKTSTPRRQSSFPAPIVTRTVKE
AFRNAGGIAERAGEKQSQSAIRDQRQSETGSERSNSADPTDQISESNGDAEMGSQGRPKK
MNAEEALADGYQQSMPRQLKGRQISSQRSAVTGQNNADQKPVNKRSLVSKKQTTANNMQY
QDTSVERLIREVTSDKFWHNPEEAELQCVPGSFESAEEYIRVFEPLLFEECRAQLYSSYE
ESVESVSRDSHVMVRVKTVDRRERGWYDVVVLPMHEYKWTFKEGEVAVLSFPRPGSASQS
SRSNRRNAGSNEDSESECGRLVGTVRRHTPIDTRDPIGAIIHFYLGDSFDSNSETNVLRK
LLPRSTWYLTSLGSLATTQREYVALHAFRRLNVQMQNAILQPSPEHFPKYEEQPPAMPDC
FTPNFADHLHRTFNGPQLSAIHWAAMHTAAGTSNGAVKKQEPWPFTLVQGPPGTGKTHTV
WGMLNVIHLVQYQHYYAALLKKLAPESYKQVSGNTSNSSEAVAAGSIDEVLQSMDQNLFR
TLPKLCPKPRMLVCAPSNAATDELLARVLDRGFIDGEMKVYRPDVARVGVDSQSRAAQAV
SVERRTDQLLMKGRDEVIGWLQQLKLREQQLSQEIAFLQRDLTVVAATGRSQGSVGVDPD
VLAQRDRNRDFLLQKLAASVESRDKVLVEMSRLLILESRFRVGSNFNMEDARASLEASFA
NEAEIVFTTVSSSGRKLFSRLSHGFDMVVIDEAAQASEVAVLPPLSLGAARCVLVGDPQQ
LPATVISKAAGTLLYSRSLFERFQQAGCPTILLSVQYRMHPQIREFPSRYFYQGRLTDSE
SVVKLPDEAYYRDTLMAPYIFYDISHGRESHRGGSSSFQNVHEAQFVLRLYEHLQKFLRA
NGGKKASVGIITPYKLQLKCLQREFEEVMSTEEGKDIYINTVDAFQGQERDVIIMSCVRA
SNHGVGFVADIRRMNVALTRARRSLWVVGNANALMQSEDWASLISDAKARKCFMDLDSIP
KDFLAMKVSNTPGRNSSNNMRNMRTGGPRPRHLEMLPDSRVNMRPDEDERSNSVPRNTSY
RNLDDLGRPGDRSRDNLPFGMPRRPNSSNGSRREV
NT seq
4068 nt
NT seq
+upstream
nt +downstream
nt
atgggatctcgaggaaggatgttatttgaccttaatgagctcccaacagaagctgaagaa
gaagaagctgctgtcgttgtgtcacaacctcagaagacccttcctgtccccacagcaggc
ccctctttgtttccgcaacaggaagtaacacagtcacagggaatattgaacaacaatgcc
ttcaagcatgcatcatctggttcaggttttcaaccttttgtgaggagcaaagattcacaa
attacaaaggagccaattaaggcagaaggtagtttgactgctagtgtagccactacatct
atggtgaccaatgatgttggtaaactgattgagccctccaatcagatttctcaggcagct
gaaagagaagaaggtgagtggtctgatgcagatgttgcttctgacactgcagggagtagt
ctaagcaacaaagaagagtcgtctggtactgcaactacacaggtgaaaagagatttccaa
gtaagcgaacctactgctgttaaatctggtgacatgaataaagatgaggctgctgctgag
cctagtgacactgaaatggtggatgcgcctaaggatcaagtggtacgtggtcccacagga
ctcgagagcacgaaaaatttggaaaataaaggaaatcagcccggggatgattcagatccg
tccaacaagtcaaaggatgttagaggtgtagaagccaattatgcattgaggtttgcgagt
aaccctgcaaagagacctaagttggatgaacacaaagaggcaatgctcggtaaaaagaga
gccaggcaaacagtgttcattaatgttgaagatgcgaagcaagctggcacgatgaagacg
tcaacacccagaaggcagtcgtcctttccagcgccaattgtcacacgtactgtgaaggaa
gcttttcgcaatgctggtggtattgctgaaagagctggagaaaaacaaagccagtcagcc
atcagggatcagaggcaatctgaaactggttcggaacggagtaattctgcagacccgact
gatcaaatttctgaatccaatggtgatgctgagatggggtctcaaggtaggccaaagaaa
atgaatgctgaagaagcccttgcagatggttatcaacaatcaatgccaaggcagttaaag
ggcagacaaatctcttctcagagatcagctgtaacaggacagaataatgctgatcagaaa
ccagttaataaaagatctcttgtttcaaaaaaacaaactacagcaaataacatgcaatat
caagacacatccgttgagcgacttatacgtgaggtgacaagtgacaagttctggcataat
ccagaggaggcagaacttcaatgtgtccctggaagtttcgaatctgctgaggagtatatt
agagttttcgagcctttgctttttgaggaatgccgcgctcagctatatagttcctatgag
gagagtgttgagtctgtatcaagggattcacatgtcatggtgcgtgtgaaaactgtggat
aggcgtgaaagaggatggtatgatgttgttgttctacccatgcacgaatataaatggact
ttcaaagaaggtgaagttgcagttttgtcatttcctcggcctggttcagcttcccaatca
agtagatctaacagacggaatgctggttcaaatgaagactctgagtcggagtgtggacga
cttgttggtacagtcaggcgccatacgcctattgatacacgtgatcccattggggcaatt
attcacttctaccttggggattcatttgattctaacagtgagaccaatgttttgaggaaa
ctgctacctcggagtacttggtatctgactagtcttggttcccttgcaacaacacaaagg
gaatatgttgccttgcatgccttccgccgtctcaatgttcaaatgcaaaatgctattctt
cagccaagtccagagcacttccccaagtatgaagagcagccacctgctatgcccgattgt
ttcactccaaattttgctgatcacttgcatcgtactttcaatgggcctcagttatcagca
attcattgggctgcgatgcatactgctgctggtacaagcaatggagcggtgaagaaacaa
gaaccctggcctttcacattagtgcaggggccgccagggacaggaaaaacccataccgtg
tggggaatgctaaacgttatccatcttgttcagtatcaacattactatgctgctcttctc
aaaaaacttgctcctgaaagttacaagcaagttagtggtaacacgagcaacagctcggag
gctgttgctgcagggtccattgatgaagttttacagagtatggatcagaaccttttccga
acccttcccaagctttgtcccaagccacggatgcttgtatgtgctccatcaaacgctgcc
acagatgagctgcttgctcgtgttcttgatcgtggtttcatagatggtgagatgaaggtc
tatcgccctgatgttgcccgtgttggagttgattcacagtctcgtgctgcacaggctgtt
tcagttgagcggaggactgatcagctgttaatgaagggccgtgatgaagtgattgggtgg
ctacaacagctaaaactccgtgagcagcagttatcacaggagatagcctttctacaaagg
gatcttaccgtggttgcagcaactggcagatcgcagggttcagttggagtagacccagat
gtgcttgctcaaagggatcgtaatcgtgattttctactccagaagcttgctgcttcagta
gaaagcagggacaaagtattggtggagatgtcacgcctgctgatattggaaagcaggttc
cgtgttggcagcaacttcaatatggaagatgctagggctagtctagaagccagttttgcc
aatgaagcagaaattgttttcacaacagtttcaagcagtggtcgcaaattattttcccgc
cttagtcatggttttgatatggttgttattgatgaagctgctcaggctagtgaagtagca
gtcctccctccactttcacttggtgcagctagatgtgtgttggttggtgatccacaacag
ctccctgctactgttatcagcaaagcagctgggactttgctctacagcaggagtctcttc
gagaggtttcagcaggctggttgccctaccattttgttatcagtgcagtatcggatgcat
ccccagatccgtgaatttccatcaagatacttctatcaagggcgccttacagatagtgaa
agtgtagtcaaattgcctgatgaggcgtattatagagatacattaatggcaccttacata
ttctatgacatctcacatggtcgtgaatctcatagaggtgggtcatcttctttccagaat
gttcatgaggcacagtttgttttacgattgtatgagcatcttcagaagttcttgagagct
aatggtggcaagaaagcatctgttggtataatcacaccgtataagttgcagctgaaatgt
cttcagcgggaatttgaggaggtcatgagtactgaggaagggaaggacatctacataaac
acagttgatgcttttcaaggacaagagcgtgatgtgattattatgtcatgtgtccgtgcc
tcaaatcatggtgtgggtttcgtggcagatatacggcgtatgaatgttgctcttactaga
gctaggagatctctatgggttgttggtaatgccaatgctcttatgcagtcagaggactgg
gcttcacttatatcagatgcaaaggccaggaaatgctttatggaccttgatagcattccc
aaggacttccttgccatgaaggtctctaacactccaggtagaaactcttcaaataacatg
aggaacatgaggacgggtggaccaaggccgaggcatttggaaatgcttccagattccagg
gttaacatgaggcctgatgaggatgagcgttctaactctgttccaagaaataccagttac
agaaatttggatgatctggggcgtcctggtgataggtctagagataatctgccgtttgga
atgcctaggaggccaaattcgtcgaatggttcgaggagagaagtgtaa
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