Oryza brachyantha (malo sina): 102712920 Help Entry 102712920         CDS       T02995                                  Name (RefSeq) pre-mRNA-splicing factor SYF1   KO K12867   pre-mRNA-splicing factor SYF1 Organism obr  Oryza brachyantha (malo sina) Pathway obr03040   Spliceosome Brite KEGG Orthology (KO) [BR:obr00001]  09120 Genetic Information Processing   09121 Transcription    03040 Spliceosome     102712920  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:obr03019]     102712920    03041 Spliceosome [BR:obr03041]     102712920 Messenger RNA biogenesis [BR:obr03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     Other transport factors      102712920 Spliceosome [BR:obr03041]  Complex B   Other components    Prp19-related factors     102712920  Complex C     102712920 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  HAT_Syf1_CNRKL1_C HAT_Syf1_M HAT_Syf1_CNRKL1_N HAT_PRP39_N HAT_PRP39_C TPR_14 TPR_19 TPR_2 TPR_15 TPR_12 TPR_8 ARM_TT21 TPR_16 ARM_TT21_C TPR_5 HTH_psq Motif Other DBs NCBI-GeneID:  102712920 NCBI-ProteinID:  XP_006658042 UniProt:  J3MNI6 LinkDB All DBs Position 7:complement(17352452..17356893) Genome browser AA seq 924 aa AA seqDB search MPSAAGGPVAVVAAAAPALGISPEMYPTEDDLAYEEEILREPFKLKGWWRYLVARAAAPF AKRAVIYERALKALPGSYKLWHAYLRERLDHARPHPISHHAYASLNNTFERALATMHKMP RVWVLYLTSLLDQRLLTRARRAFDRALRALPVTQHDRIWPLYLRLASLPACPVETSLRVF RRYLQYDPSHAEDFIDFLISANRWQEAADRLASVLNDDGFRSVKGKTRHQLWLELCEILT KHADEVAGLKVDAILRGGIRKFTDEVGKLWTSLADYYVRRTLYEKARDVFEEGVASVMTV QEFSVVFEAYTQFEQSMLAAKLEAAEEEGAGSDGEDEAGRKNGMDKLSKKFVAGCWLNDE DDTDSRLARFERLLDRRPELLSSVLLRQNPHNVEEWHRRVKLFEKDPTRQVATYVEAVKT VDPMKAAGKPHTLWVAFAKMYEKHNRLDSAEEIFKKATQVNYKAVDHLASIWCEWAEMEL RHNNFDKAIELMRQATAEPSVEVKRRAAAEGDEPVQMKVHKSLKLWSFYVDLEESLGTLE STRAVYERILDLRIATPQIVLNYAYLLEENKYFEDAFKVYERGVKIFKYPHVKDIWVTYL TKFVRRYQRSKLERARELFDEAVKQAPPQEKKALYLQYAKLEEDYGLAKRAMNVYDEAVR AVPNSEKMSMYEIYIARAAELFGVPRTRQIYEQAIESGLPDRDVMTMCMKFAELERNLGE IDRARAIYVHASNYADPNSHPEFWKKWNEFEIQHGNEDTFREMLRIKRTVAASRSQTHFI LPEYLMQRDQRLNLDEAVDTLKRAGVPEDEMAALERQLAPGPSAAPPPAAAPANRMMNFV SAGVQAQAESSRQPQAAAAANNEDIELPDESDEEDDVQIAEKSVPAAVFGELGKRAAENR EEESSGAQENEQLGALERIKRRRQ NT seq 2775 nt NT seq  +upstreamnt  +downstreamnt atgccgtcggcggcggggggtccggtggccgtcgtggcggcggcggcaccggcgctgggg atatcgccggagatgtacccgacggaggacgacctggcgtacgaggaggagatcctgcgg gagccgttcaagctgaaggggtggtggcgctacctcgtcgcccgcgccgccgcgccgttc gccaagcgcgccgtcatctacgagcgggcgctcaaggcgctcccggggagctacaagctg tggcacgcctacctccgggagcgcctcgaccacgcccgcccgcacccgatctcccaccac gcctacgcctcgctcaacaacaccttcgagcgcgccctcgccaccatgcacaagatgccc cgcgtctgggtgctctacctcacctcgctgctcgaccagcgcctgctcacccgcgctcgc cgcgccttcgaccgggcgctgcgcgcgctgccggtcacgcagcacgaccgcatctggccg ctctacctccgcctcgcctcgctgccggcctgccccgtcgagacctcgctccgcgtcttc cgccgctacctccagtacgacccctcccacgccgaggatttcatcgacttcctcatctcc gcgaaccgctggcaggaggccgccgaccgcctcgcgtctgtgctcaacgatgacggcttc cgctctgtcaagggcaagaccaggcaccagctctggctcgagctctgcgaaatcctcacc aagcacgccgatgaggtcgctgggcttaaggtggatgccatactgcgcggcggcatacgc aagttcactgacgaggttggcaagctgtggacctctctggctgattactatgtcagaaga accttgtatgagaaggcgagagatgttttcgaggagggggttgcttcggtgatgacggtt caggagttcagtgtggtgtttgaggcatatacacaatttgagcagagtatgctagcggca aagctggaggcagctgaggaggagggtgcagggagtgatggggaagatgaagcgggcagg aagaatgggatggacaagctatcgaagaagtttgttgcaggttgctggctgaacgatgag gatgatactgattctaggctggcaaggtttgagcggctgttggatcgccgaccagagctc ctcagcagtgtcctgttgcgacagaatccacataacgtggaagaatggcacaggagggtg aaactttttgagaaggatcctacaagacaagtagctacatatgttgaagctgtgaagact gtagacccgatgaaggctgctggaaaaccacatactctatgggtcgcatttgcaaagatg tatgagaaacataatcgtctagatagtgctgaagagatctttaaaaaagcaactcaagtg aactacaaggcagttgaccacttagccagtatttggtgtgagtgggcagagatggagctg aggcacaataattttgacaaggctattgagctgatgaggcaagctaccgcagaaccctct gttgaggttaagagacgagctgctgccgagggggatgaacctgtccaaatgaaagtgcat aaatctctgaaactgtggagcttctatgtggacctggaggaaagccttggaaccttggaa tcaactcgtgcagtttatgagagaatactggatttacgaatcgccaccccgcaaatagtt ctcaattatgcatatcttcttgaggaaaacaagtattttgaagatgcatttaaagtgtat gagcgtggtgtgaaaatttttaaatacccccacgttaaggacatttgggtgacctacctc acaaagtttgtaaggaggtatcagagaagcaagttagaacgggcaagagaactgttcgat gaagctgtcaaacaggctcctccacaagaaaagaaagctttgtatttgcagtatgctaaa ctggaggaagactatggccttgcaaaacgtgcaatgaatgtatatgatgaagctgtaagg gctgttcctaatagcgaaaagatgagtatgtacgaaatatatatagcacgggctgctgag ctatttggtgttccaagaacaagacagatatacgagcaagcaattgaatctgggctccca gacagagatgttatgacaatgtgcatgaaatttgcggaacttgaaagaaaccttggagaa attgatcgtgcccgtgccatttatgtccatgcatccaactacgccgatccaaactcacac cctgaattttggaagaaatggaacgaatttgagattcagcatggtaacgaagatacattc agggagatgcttcgcatcaagcgcactgtggctgctagccgcagtcagacgcatttcata ctcccagagtacctgatgcagagggaccagaggctaaacctggatgaggcagttgacact ctgaaacgagctggcgttcccgaggacgagatggctgccctagaaaggcagctagcgcct ggaccttccgctgctccaccaccagctgcagctcctgccaaccggatgatgaactttgtc agcgctggagtgcaggcgcaggctgagagcagcaggcaaccacaggctgcggctgctgcg aacaacgaggacatcgagctgcccgatgagagtgacgaggaagatgatgtccaaattgcg gagaagagtgttcccgctgctgtgtttggagagctcggcaagagagctgcagagaacagg gaggaggaaagctctggtgcccaggagaatgagcagctgggcgcccttgagagaattaag cgaaggcgtcaatga

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